DN617426

Overview
NameDN617426
Unique NameDN617426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5722 contig Csv1_Contig5722:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  197 CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIH 577
            C   NPID CWRC P+W + R++L  C  GFG    GG+ GRIYVVT P D D+VNP+PGTLR+AVIQ EPLWI+F  DM+IRL +EL++ S KTID RGA+VHIA G  IT+QYV NIIIHGL++H
Sbjct:  121 CTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVH 247          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.005e-44
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 2
Query:  209 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            NP+D CWR   +W+ NR+ LADCA+GFG + +GG+ G IYVVT+P D +  NP PG+LRY VIQ +PLWI FA+DM I L  EL++NS+KTIDGRGA V IA GPCITIQ VTN+I+HG++IHDC
Sbjct:   47 NPVDSCWRLKSDWDVNREDLADCAVGFGSSTLGGKKGNIYVVTNPYD-NAQNPHPGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDC 170          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.422e-43
Identity = 77/125 (61.60%), Postives = 99/125 (79.20%), Query Frame = 2
Query:  209 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            NP+D CWR   +W  NR+ LADC +GFG + +GG+ G +YVVT+P D +  NP+PG+LRY VIQ +PLWI FA+DM I L+ EL++NS+KTIDGRGA V IA GPCITIQ VTN+I+HG++IHDC
Sbjct:   47 NPVDSCWRLKSDWAANRKDLADCVVGFGSSTLGGKKGNLYVVTNPYD-NAQNPQPGSLRYGVIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDC 170          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.469e-43
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 2
Query:  209 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            NPID CWR +P W  NRQ LA CA+G+GK A+GG++G IYVVT+P D +   P PGTLRYAV Q +PLWI FARDM I LK +L++NS+KTIDGRGA V IA GPC+ I+ V ++IIHG++IHDC
Sbjct:   36 NPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNPSD-NPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDC 159          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.469e-43
Identity = 80/127 (62.99%), Postives = 96/127 (75.59%), Query Frame = 2
Query:  197 CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIH 577
            C   NPID CWRC  +W K R++L  C  GFG    GG+ GRIYVVT   D D+VNPKPGTLR+AVIQ EPLWIIF  DM+IRL +EL++NS KTID RGA+VH+A G  IT+Q+V N+IIHGL+IH
Sbjct:  118 CTASNPIDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRGRIYVVTSNLDEDMVNPKPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHVAHGAGITMQFVKNVIIHGLHIH 244          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.941e-42
Identity = 75/126 (59.52%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  197 CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNI 574
            C   NPID+CWRCD NW  NR++LADC +GFG+   GG+DG IYVV D  D D++NPKPGTLR+AV +D PLWIIFAR M I+L++EL++ S KTIDGRGA V+I  G  +T+Q+V N+IIH + +
Sbjct:  101 CLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVKDASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYV 226          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.428e-42
Identity = 73/122 (59.84%), Postives = 98/122 (80.33%), Query Frame = 2
Query:  209 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNI 574
            N ID CWR D NW+KNR++LADC +GFG+   GG++G IYVVTDP D D++ PKPGT+R+AV +D PLWIIFAR M I+L++ELI+ + KTIDGRGA ++I GG  +T+Q+V N+IIH ++I
Sbjct:  101 NAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHI 222          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.203e-41
Identity = 85/144 (59.03%), Postives = 101/144 (70.14%), Query Frame = 2
Query:  158 SINASRRNLGYL---SCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            +INA RR L       C   N ID CWRCDP W ++RQ++ADCA+GFG NA+GG+ G  Y+VTD  D DVV+PKPGTLR+ VIQ  PLWI FAR M IRL  ELI++S KTIDGRG  VHIA G  I IQ  +N+II  L IH+
Sbjct:   27 AINAPRRKLTKKYRGPCMAVNSIDKCWRCDPFWAEDRQKMADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHN 170          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.678e-39
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  194 SCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGLNIHDC 583
            SC + NPID CWR D NW +NR +LADCA+GFG + +GG+ G +Y VT+  D D VNP PGTLRY   +D PLWIIF+ +M I+LK  + +  +KT DGRGA V+I  GGPC+ I+ V+N+IIHGL+++ C
Sbjct:   18 SCFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNSDD-DPVNPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYIGNGGPCVFIKRVSNVIIHGLHLYGC 147          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38
Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = 2
Query:  191 LSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGLNIHDC 583
            +SC + NPID CWR D NW++NR +LADCA+GFG +A+GG+ G  Y VT   D D VNP PGTLRY   ++  LWIIF++++ I+L   L +   KTIDGRGA VHI  GGPC+ ++ V+++I+HGLNIH C
Sbjct:   17 VSCFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVTSSDD-DPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHIGNGGPCLFMRTVSHVILHGLNIHGC 147          
The following BLAST results are available for this feature:
BLAST of DN617426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL7_ARATH6.895e-4462.99Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL17_ARATH9.005e-4463.20Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]
PEL16_ARATH3.422e-4361.60Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL4_ARATH4.469e-4363.20Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
PEL19_ARATH4.469e-4362.99Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL3_ARATH4.941e-4259.52Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL6_ARATH8.428e-4259.84Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL56_SOLLC3.203e-4159.03Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
SBP_CRYJA6.678e-3954.96Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAC1_CHAOB1.139e-3854.55Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617426 ID=DN617426; Name=DN617426; organism=Citrus sinensis; type=EST; length=585bp
CAACAACAAGAAGAGGAAATTAAACCGGAAAAGAAAAAAAAAAATGGCAA
TCCCTTCTCCTTCTCTTAGCATCTTCCTCCTCTTTCTCATGACCCCAGCT
CTCATTTCAGCTTCCGCAGTTCCGGACCCAGAATTAGTCGTACACGAAGT
ACACAAGAGCATCAATGCGTCTAGGAGGAACCTAGGTTACTTGTCTTGCG
GAACCGGCAATCCGATTGACGATTGCTGGCGGTGCGACCCCAACTGGGAG
AAGAACCGGCAAAGGCTGGCGGATTGTGCGATTGGGTTCGGCAAGAATGC
GGTTGGTGGGCGTGATGGTAGAATTTATGTGGTCACTGACCCTGGTGACT
ATGATGTCGTAAATCCTAAACCCGGAACTCTAAGGTACGCTGTGATCCAA
GATGAGCCGTTATGGATCATTTTCGCTCGTGATATGACCATCAGATTGAA
GGAAGAGTTGATCATGAACTCTTTCAAGACCATCGACGGTCGGGGAGCCA
GTGTGCACATAGCTGGTGGTCCATGCATTACCATACAGTACGTGACCAAC
ATTATTATCCATGGGTTAAACATACACGACTGTAA
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