DN617426

Overview
NameDN617426
Unique NameDN617426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5722 contig Csv1_Contig5722:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.643e-38
Identity = 79/147 (53.74%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  140 VHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            V E   S N +RR+L   +C   N ID CWRC  +W  NRQ LADCA GF K   GG+ G +Y VT   D DV NPK GTLR+A  Q+ PLWIIF R+M I L +EL++NS KTIDGRG  V+I     +T+  V NIIIH +NIHD
Sbjct:   29 VEEFLPSANETRRSLK--ACEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG-LTLMNVKNIIIHNINIHD 172          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.148e-37
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 2
Query:  191 LSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGLNIHDC 583
            +SC + NPID CWR D NW +NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY   +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+HGL+IH C
Sbjct:   17 VSCCSDNPIDSCWRGDSNWGQNRMKLADCAVGFGSSTMGGKGGDFYTVTSADD-NPVNPTPGTLRYGATREKTLWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHGLHIHGC 147          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.664e-37
Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 2
Query:  191 LSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGLNIHDC 583
            +SC + NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY   +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H L+IH C
Sbjct:   17 VSCYSDNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGC 147          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.786e-37
Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  146 EVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            ++  S N +RR+L    C   N ID CWRC P+W +NRQ L +CA GFGK   GG+ G IY+VT   D DVVNPK GTLR+   QD PLWIIF RDM I L++E+++ S KTIDGRGA V +  G  IT+  V N+IIH ++IHD
Sbjct:   30 DILPSPNDTRRSLQ--GCEAHNIIDKCWRCKPDWAENRQALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGG-ITLMNVKNVIIHNIDIHD 171          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.051e-36
Identity = 76/140 (54.29%), Postives = 93/140 (66.43%), Query Frame = 2
Query:  161 INASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            +N +RR     + G  N ID CWR   +W +NR+ LADCA GFGK  VGG+DG IY VT   D DV NPK GTLR+   Q+ PLWIIF RDM IRL +E+++NS KTIDGRGA V I      T+  V N+IIH +N+HD
Sbjct:   35 VNETRR---LTTSGAYNIIDGCWRGKADWAENRKALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIINAG-FTLNGVKNVIIHNINMHD 170          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 66/126 (52.38%), Postives = 93/126 (73.81%), Query Frame = 2
Query:  209 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGLNIHDC 583
            NPID CWR D NW++NR +LADC +GFG + +GG+ G IY VT   D + VNP PGTLRY   +++ LWIIF+++M I+L+  L +  +KTIDGRGA VH+  GGPC+ ++  +++I+HGL+IH C
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSSED-NPVNPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHLGNGGPCLFMRKASHVILHGLHIHGC 126          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.911e-36
Identity = 78/147 (53.06%), Postives = 93/147 (63.27%), Query Frame = 2
Query:  140 VHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            V E+  S+N +R      +C   N ID CWR   +WE NRQ LADCA GF K   GG+ G +Y VT   D DV NPK GTLR+A  Q+ PLWIIF  DM I L +EL++NS KTIDGRG  V I  G  +T+  V NIIIH +NIHD
Sbjct:   29 VGEILPSVNETR---SLQACEALNIIDKCWRGKADWENNRQALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEIINGG-LTLMNVKNIIIHNINIHD 171          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.011e-35
Identity = 75/151 (49.67%), Postives = 93/151 (61.59%), Query Frame = 2
Query:  128 PELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 580
            P     ++ + + ++       +CGT N ID CWR   +W +NR+ LADCA GF K  +GG+DG IY VT   D DV NPK GTLR+   Q+ PLWIIFARDM IRL  EL +N+ KTIDGRGA V I       I  V NIIIH + +HD
Sbjct:   22 PVRSAEDLQQILPSANETRSLTTCGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAG-FAIYNVKNIIIHNIIMHD 171          
The following BLAST results are available for this feature:
BLAST of DN617426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MPA12_AMBAR9.643e-3853.74Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPAJ1_JUNVI2.148e-3753.03Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
MPAJ1_JUNAS3.664e-3752.27Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPAA2_AMBAR4.786e-3753.79Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA11_AMBAR4.051e-3654.29Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPAC1_CUPAR5.291e-3652.38Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]
MPA13_AMBAR6.911e-3653.06Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR2.011e-3549.67Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617426 ID=DN617426; Name=DN617426; organism=Citrus sinensis; type=EST; length=585bp
CAACAACAAGAAGAGGAAATTAAACCGGAAAAGAAAAAAAAAAATGGCAA
TCCCTTCTCCTTCTCTTAGCATCTTCCTCCTCTTTCTCATGACCCCAGCT
CTCATTTCAGCTTCCGCAGTTCCGGACCCAGAATTAGTCGTACACGAAGT
ACACAAGAGCATCAATGCGTCTAGGAGGAACCTAGGTTACTTGTCTTGCG
GAACCGGCAATCCGATTGACGATTGCTGGCGGTGCGACCCCAACTGGGAG
AAGAACCGGCAAAGGCTGGCGGATTGTGCGATTGGGTTCGGCAAGAATGC
GGTTGGTGGGCGTGATGGTAGAATTTATGTGGTCACTGACCCTGGTGACT
ATGATGTCGTAAATCCTAAACCCGGAACTCTAAGGTACGCTGTGATCCAA
GATGAGCCGTTATGGATCATTTTCGCTCGTGATATGACCATCAGATTGAA
GGAAGAGTTGATCATGAACTCTTTCAAGACCATCGACGGTCGGGGAGCCA
GTGTGCACATAGCTGGTGGTCCATGCATTACCATACAGTACGTGACCAAC
ATTATTATCCATGGGTTAAACATACACGACTGTAA
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