DN617423

Overview
NameDN617423
Unique NameDN617423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17
Identity = 41/100 (41.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  230 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 523
            HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   82 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17
Identity = 41/100 (41.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  230 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 523
            HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   82 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16
Identity = 40/100 (40.00%), Postives = 69/100 (69.00%), Query Frame = -1
Query:  230 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 523
            HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +++ + +++  L L S++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   82 HYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  230 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 523
            HY++  Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L  ++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   82 HYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  230 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 520
            YF ++QG+IFV+DS+DR R+   +DEL  +L+  ++  R   +++ ANK D+P AM  A+IT  LGL+  R   W I STCA +G+GL + +  LS+ I
Sbjct:   83 YFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSSEI 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  221 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 526
            + Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D L   I  +
Sbjct:   80 KSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  221 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 526
            + Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D L   I  +
Sbjct:   80 KSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  230 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 520
            YF ++QG+IFV+DS+DR R+   +DEL  ++   ++  R   +++ ANK D+P AM A++IT  LGL+  R   W I STCA +G+GL + +  LS  I
Sbjct:   83 YFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLSAEI 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = -1
Query:  254 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 520
            Y +NT GL++VVDS D+ R+ E++ +   +L  + +++  +++ ANKQD+P A+ A +IT    +  L   R+WY+Q  CA +GEGL +G
Sbjct:   78 YCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQG 167          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  203 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*VIGQ 526
            + Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +  ++ Q
Sbjct:   87 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQ 195          
The following BLAST results are available for this feature:
BLAST of DN617423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
ARL6_PONAB9.826e-1741.00ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN9.826e-1741.00ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL6_MOUSE1.676e-1640.00ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL6_BOVIN1.676e-1640.00ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARL6_CAEBR1.853e-1543.43ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL4C_MOUSE1.853e-1544.66ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN1.853e-1544.66ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL6_CAEEL4.128e-1542.42ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL14_HUMAN9.197e-1538.89ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL4A_RAT3.495e-1438.53ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617423 ID=DN617423; Name=DN617423; organism=Citrus sinensis; type=EST; length=526bp
AATTCTGGAATAATCGAGGGTAATTTAAACTCTACAATGACAATGCAGAA
AACTTTATAGTATGGTGCCAATCAAATATCTAACACAAACAAATACATTC
TACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGACAAAATAAACA
AAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAGAGTCGCTCAG
ACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGGAGAGCCAGTC
CAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTGCTCTGGATGT
ACCAGTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATCAGTGATCTCT
GCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAAAAACAAGCAG
CACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGCAGTTCATCTC
TAGCTTCAACCACACGGTCACGATCATTGCTATCAACCACAAAGATAAGT
CCTTGAGTGTTTTGGAAGTAATGTCT
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