DN617423

Overview
NameDN617423
Unique NameDN617423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:299..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = -1 
Query:  221 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 526
            R Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L      ++Q   A  G GL  GL+ L   I  +
Sbjct:   87 RSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELATATLTHVQGCSAVDGLGLQPGLERLYEMILKR 189
The following BLAST results are available for this feature:
BLAST of DN617423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
ARL4D_BOVIN9.517e-1237.86ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617423 ID=DN617423; Name=DN617423; organism=Citrus sinensis; type=EST; length=526bp
AATTCTGGAATAATCGAGGGTAATTTAAACTCTACAATGACAATGCAGAA
AACTTTATAGTATGGTGCCAATCAAATATCTAACACAAACAAATACATTC
TACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGACAAAATAAACA
AAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAGAGTCGCTCAG
ACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGGAGAGCCAGTC
CAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTGCTCTGGATGT
ACCAGTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATCAGTGATCTCT
GCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAAAAACAAGCAG
CACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGCAGTTCATCTC
TAGCTTCAACCACACGGTCACGATCATTGCTATCAACCACAAAGATAAGT
CCTTGAGTGTTTTGGAAGTAATGTCT
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