DN617423

Overview
NameDN617423
Unique NameDN617423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 7.714e-46
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = -1
Query:  221 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 526
            RHYFQNTQG+IFVVDSNDR+R+ EA +EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGL+WLS N+ N+
Sbjct:   79 RHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 1.316e-45
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQG+IFVVDSNDR+R+ EAR+EL RML+EDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLRQR WYIQ+ CATSG+GLYEGL+WLS N+  K+
Sbjct:   79 RHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.316e-45
Identity = 87/103 (84.47%), Postives = 95/103 (92.23%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N++
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 1.316e-45
Identity = 87/103 (84.47%), Postives = 95/103 (92.23%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N++
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 7.220e-44
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDR+R+ EA DEL +MLNEDELRDAVLLVF NKQDLPNAM+ AE+TDKL LHSLR R WYIQSTCATSG+GLYEGLDWLSN + + +
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSS 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.608e-43
Identity = 81/103 (78.64%), Postives = 95/103 (92.23%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYF+NT+G+IFVVDSNDR R+ EAR+ L RMLNEDE+R+AVLLVFANKQDLP AM+AAEIT+KLGLHS+RQR WYIQ+TCATSGEGLYEGL+WLS N+ N+A
Sbjct:   79 RHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKNQA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.322e-42
Identity = 81/97 (83.51%), Postives = 91/97 (93.81%), Query Frame = -1
Query:  236 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 526
            RHYFQNTQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVFANKQDLPNAM+ AEIT +LGL SL +R WYIQSTCAT+G+GLYEGL+WL+N
Sbjct:   79 RHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLAN 175          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.033e-42
Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = -1
Query:  221 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 526
            RHYFQNTQGLIFVVDSNDRDR+ EA  EL  ML EDELRDAVLLVFANKQDLPNAM AAE+TDKL L+ LR RHW+IQSTCAT G GLYEGLDWLS  +A K
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.505e-41
Identity = 77/103 (74.76%), Postives = 94/103 (91.26%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHY++NT+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+AV LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQSTCATSGEGLYEGL+WLSNN+ N++
Sbjct:   79 RHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 168.318 bits (425), Expect = 1.966e-41
Identity = 77/99 (77.78%), Postives = 91/99 (91.92%), Query Frame = -1
Query:  230 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 526
            R+YFQNTQG+IFVVDSNDRDR+ EAR+EL  MLNEDEL+DAVLLV ANKQDLPNAMNAAEIT+K+GLHS+  R W+IQ+TCAT+G+GLYEGL+WLSN +
Sbjct:   79 RYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQV 177          
The following BLAST results are available for this feature:
BLAST of DN617423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
ARF1_SCHPO7.714e-4683.33ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_CRYNE1.316e-4582.52ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF12_CAEEL1.316e-4584.47ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.316e-4584.47ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF1_DICDI7.220e-4480.58ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_ASHGO1.608e-4378.64ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF_AJECA2.322e-4283.51ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF2_DROME3.033e-4280.39ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF2_YEAST1.505e-4174.76ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_CANAL1.966e-4177.78ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617423 ID=DN617423; Name=DN617423; organism=Citrus sinensis; type=EST; length=526bp
AATTCTGGAATAATCGAGGGTAATTTAAACTCTACAATGACAATGCAGAA
AACTTTATAGTATGGTGCCAATCAAATATCTAACACAAACAAATACATTC
TACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGACAAAATAAACA
AAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAGAGTCGCTCAG
ACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGGAGAGCCAGTC
CAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTGCTCTGGATGT
ACCAGTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATCAGTGATCTCT
GCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAAAAACAAGCAG
CACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGCAGTTCATCTC
TAGCTTCAACCACACGGTCACGATCATTGCTATCAACCACAAAGATAAGT
CCTTGAGTGTTTTGGAAGTAATGTCT
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