DN617418

Overview
NameDN617418
Unique NameDN617418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:104..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 207
            +++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    6 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 207
            +++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    6 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 207
            +++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    6 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 207
            +++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    6 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 195
            + +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:    8 ITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 38/84 (45.24%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 252
            +++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    6 IQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86
[Close]
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 252
            +++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    6 IQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86
The following BLAST results are available for this feature:
BLAST of DN617418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2A_XENLA1.827e-1353.62Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB1.827e-1353.62Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE1.827e-1353.62Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK1.827e-1353.62Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
SRFC_DICDI2.386e-1353.85Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN6.941e-1345.24Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE2.638e-1244.05Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617418 ID=DN617418; Name=DN617418; organism=Citrus sinensis; type=EST; length=483bp
GTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGC
AAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTT
GTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTAC
GAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAA
GTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGG
AGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCC
CTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAA
CAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGC
AGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTG
CAACATAAGGAACAGTTGCTGAGCGAAGCAAAT
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