DN617418

Overview
NameDN617418
Unique NameDN617418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:104..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.665e-23
Identity = 65/160 (40.62%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQY--MLDTLTELQHKEQ 465
            +E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S++  L++Y K         ++ R  L+   +    E  K+K   + +Q   R+L GE++  LN +EL  LE  L+  L  IR+ + +   M+   T+   +EQ
Sbjct:    6 IEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHK---------LTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQ 155          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN 483
            + ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS  GKL++F +S+SM + ++RY   +        S  + L+        +LK          R + GEEL  LN ++L+ LE+ L+  L  +  T+++ +LD +  L+ K   L E N
Sbjct:   25 IAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQF-ASTSMEQIIDRYNSHSKTLQRAEPSQLD-LQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEEN 183          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 64/155 (41.29%), Postives = 95/155 (61.29%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 462
            +E+KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FS+ GK +EFCS S+ +K + +RYQ+          S       + Q+    LK     L+   R  +GE+L  L   EL  LE+ +D +LK++R  R  +++ T TE   K+
Sbjct:    6 IEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRH-RKYHVITTQTETYKKK 153          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.153e-22
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS-MLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN 483
            +E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS  GKL EFCS  + M + ++RY   N G   P+    +  +L  + E L+ +     L+   R   G +L  +   EL+ LERQL+ S+ ++R  + + M   L  L  K ++L E N
Sbjct:    6 IEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTN-GLRLPD-HHDDQEQLHHEMELLRRETC--NLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDN 163          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 477
            +++KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ GKL+EF S S   K L + YQK         V    +     Q++  KLK     L++  R  +GE L  LN ++LE L   +D SLK IR  + + + + +   + K + + E
Sbjct:    6 IQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQK------TVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEE 159          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 62/164 (37.80%), Postives = 100/164 (60.98%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSML-KTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 477
            +E+KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+ ++C  S  L   L++YQK +    + A   N+S           E  ++K   ++LQ   R+L GE++  LN K L ++E  ++  L ++R     + ++ L   +  E++++E
Sbjct:    6 IEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS----------NEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVR----DHQMEILISKRRNEKMMAE 155          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 56/162 (34.57%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNS-KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN 483
            +E+KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++GKL++FCS   +L  +E + +         +      +     E  +L+   + L+ S R   GE+L  +++  EL  L+ QL+ SL ++ + + + M   L +++   Q + E N
Sbjct:    6 IEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVIL--MELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQN 165          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 58/154 (37.66%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 459
            VELK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S    +  + +RY K    AP       + ++    QE  ++K     L+   R  +G++L  L  +++ +LE+Q++ SL ++R  + Q +   L E+  +
Sbjct:    6 VELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK----APSTRFEEMD-VQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 56/147 (38.10%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    1 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYM 429
            +E+KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF++ GK++EFCS S++++  L+ Y K         +S +   +   +    E  ++K   +++Q   R+L GE++  LN KEL  LE  L+     +++ + +++
Sbjct:    6 IEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK---------LSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFV 143          
BLAST of DN617418 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 66/181 (36.46%), Postives = 106/181 (58.56%), Query Frame = 1
Query:    4 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--QKCNYGA--PEPNV--------------SAREALELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN 483
            E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F +SS+M + +++Y     N G    +P++              ++   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N
Sbjct:    7 EIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEEN 186          
The following BLAST results are available for this feature:
BLAST of DN617418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
FBP1_PETHY5.665e-2340.63Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD47_ORYSJ1.648e-2237.89MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD16_ORYSJ1.648e-2241.29MADS-box transcription factor 16 OS=Oryza sativa s... [more]
TT16_ARATH2.153e-2239.51Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MADS1_PETHY3.672e-2240.00Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
PIST_ARATH4.796e-2237.80Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD30_ORYSJ8.180e-2234.57MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD31_ORYSJ1.068e-2137.66MADS-box transcription factor 31 OS=Oryza sativa s... [more]
GLOB_ANTMA1.395e-2138.10Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD55_ORYSJ2.380e-2136.46MADS-box transcription factor 55 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617418 ID=DN617418; Name=DN617418; organism=Citrus sinensis; type=EST; length=483bp
GTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGC
AAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTT
GTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTAC
GAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAA
GTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGG
AGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCC
CTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAA
CAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGC
AGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTG
CAACATAAGGAACAGTTGCTGAGCGAAGCAAAT
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