DN617410

Overview
NameDN617410
Unique NameDN617410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = 3
Query:  126 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDR 479
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN+ESP N  AA+ W+++
Sbjct:   55 ESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDIL-------------KDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQ 159          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 38/120 (31.67%), Postives = 56/120 (46.67%), Query Frame = 3
Query:  144 EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKV 503
            +W   I G   T + GG +   + +P+ YP+ PP VKF    +HPNVYP G +C+SIL+   D           W P  T++            PN  SPA   A + +   + ++ KKV
Sbjct:   40 KWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 3
Query:  126 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRD 476
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 3
Query:  126 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRD 476
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 3
Query:  126 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRD 476
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR 473
            L   P  G SA   +E N+  ++V I+GP  + YEGG F   +  P  YP + P V+F T+I+HPN+   GR+C+ IL              ++W P   +             PN + P +   AK W+
Sbjct:   17 LLSEPAPGISASPSEE-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 132          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13
Identity = 40/130 (30.77%), Postives = 59/130 (45.38%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR 473
            L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P  YP + P V+F T+I+HPN+   GR+C+ IL              ++W P   +             PN + P +   AK W+
Sbjct:   17 LLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 132          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR 473
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +             PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR 473
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +             PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR 473
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +             PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
The following BLAST results are available for this feature:
BLAST of DN617410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UBE2C_XENLA2.094e-1333.05Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC9_YEAST2.094e-1331.67SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBE2C_MOUSE2.734e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA2.734e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN2.734e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC36_ARATH3.571e-1330.77Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH3.571e-1330.77Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_RAT6.092e-1331.54Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB6.092e-1331.54Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE6.092e-1331.54Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617410 ID=DN617410; Name=DN617410; organism=Citrus sinensis; type=EST; length=574bp
AGAGCCAATTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAG
GCAAGTCTCCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGT
TGCTGGGTTTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGA
GTGTTACAATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTC
AATGCCATTATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGT
GAAGTTTACAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTG
TCTGCATATCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAG
CTTGCAAGTGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTT
GAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATG
TCGAAGCTGCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAA
GTAGGCCGCTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAA
GCACTCTTTTTTCTCTACCTATGT
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