DN617410

Overview
NameDN617410
Unique NameDN617410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 41/147 (27.89%), Postives = 64/147 (43.54%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 521
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F  +YP  PP V F T I+H N+   G +C+ IL              + W P  T+              N   P     A ++   R +  +   +  +R
Sbjct:   66 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 198          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 3
Query:  162 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPA-NVEAAKEWRDRRDDFKKKVGRCVRR 521
            + P + +Y GG F   ++ P  Y N PP VK  T++WHPN+  DG +C+SIL     D  G       W P   +               D + A N++AA+ W   R+ F  +V   + R
Sbjct:   65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYG-------WRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISR 178          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 38/121 (31.40%), Postives = 55/121 (45.45%), Query Frame = 3
Query:  162 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 521
            + P +  Y+GG F   +  P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N   P N+EAA+     ++DF+ KV   +RR
Sbjct:   69 VSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTG-------WAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRR 182          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 39/130 (30.00%), Postives = 58/130 (44.62%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR 473
            L   P  G SA    + N   + V I GP D+ +EGG FN  +    +YP S P V+F T+I+HPN+   GR+C+ IL              ++W P   +             PN + P   + A+ W+
Sbjct:   15 LMTEPAPGISATPATD-NFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWK 130          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 40/133 (30.08%), Postives = 61/133 (45.86%), Query Frame = 3
Query:  126 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 521
            D   +  + +T+I P +  Y+GG F   +  P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   58 DPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKR 182          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = 3
Query:  159 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 518
            +I P +  Y+GG F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+             PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = 3
Query:  159 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 518
            +I P +  Y+GG F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+             PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 40/139 (28.78%), Postives = 59/139 (42.45%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKK 500
            L  +PV G +A   D+ N+  + VTI GP  + YE G F   +  P +YP   P V+F T+I+HPN+   GR+C+ +L                W P   +             PN   P   + A++W       K K
Sbjct:   15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAK 139          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 3
Query:  120 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 497
            LVDE N  E    I GPPDT YEGG +   +  P  YP +PP V+F T+IWHPN+    G +C+ IL              ++W    T+                + P +   A +++   + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 3
Query:  120 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 497
            LVDE N  E    I GPPDT YEGG +   +  P  YP +PP V+F T+IWHPN+    G +C+ IL              ++W    T+                + P +   A +++   + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
The following BLAST results are available for this feature:
BLAST of DN617410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UB2E2_HUMAN1.149e-1127.89Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC12_CAEEL1.500e-1130.58NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UB2FB_MOUSE1.500e-1131.40NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBE2N_DICDI1.960e-1130.00Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2F_CHICK2.559e-1130.08NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBC12_XENTR2.559e-1132.50NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA2.559e-1132.50NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC13_YEAST3.343e-1128.78Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2K_MOUSE4.366e-1130.71Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN4.366e-1130.71Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617410 ID=DN617410; Name=DN617410; organism=Citrus sinensis; type=EST; length=574bp
AGAGCCAATTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAG
GCAAGTCTCCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGT
TGCTGGGTTTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGA
GTGTTACAATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTC
AATGCCATTATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGT
GAAGTTTACAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTG
TCTGCATATCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAG
CTTGCAAGTGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTT
GAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATG
TCGAAGCTGCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAA
GTAGGCCGCTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAA
GCACTCTTTTTTCTCTACCTATGT
back to top