DN617410

Overview
NameDN617410
Unique NameDN617410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617410_ssr15 microsatellite DN617410_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:32..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 40/133 (30.08%), Postives = 61/133 (45.86%), Query Frame = 3 
Query:  126 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 521
            ++ + F+ +VT   P +  Y+GG F      P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   60 NKLHCFQLTVT---PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKR 182
The following BLAST results are available for this feature:
BLAST of DN617410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UBE2F_BOVIN9.726e-1130.08NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617410 ID=DN617410; Name=DN617410; organism=Citrus sinensis; type=EST; length=574bp
AGAGCCAATTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAG
GCAAGTCTCCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGT
TGCTGGGTTTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGA
GTGTTACAATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTC
AATGCCATTATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGT
GAAGTTTACAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTG
TCTGCATATCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAG
CTTGCAAGTGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTT
GAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATG
TCGAAGCTGCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAA
GTAGGCCGCTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAA
GCACTCTTTTTTCTCTACCTATGT
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