DN617410

Overview
NameDN617410
Unique NameDN617410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617410_ssr15 microsatellite DN617410_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:32..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.670e-34
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA---KEWRDRR 482
            L + PV GF   LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP  +F T++WHPN+Y  G VCISILHPP DDP   EL SERW P   V             PN  SPANV+A+   ++W++ +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.084e-29
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 524
            L +NP   F    V+E NI EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   13 LIENPSENFKIS-VNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.063e-29
Identity = 65/152 (42.76%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 524
            L +NP   F    V+E N+ EW V + GP DTLYEGG F A + FP NYP  PP + FT+E+WHPN+Y DGRVCISILH    +  G       W PV  ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   13 LTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.034e-28
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 524
            +L +NP   F    V+E N+ EW V + GP DT YEGG F A ++FP NYP  PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   +E            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   12 NLTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKS 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.351e-28
Identity = 65/148 (43.92%), Postives = 89/148 (60.14%), Query Frame = 3
Query:   90 KNPVAGFSAGLVDETNIFEWSVTI-IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            K  +  F   L D++NIF W++ + +   D++Y GGFF A M FP ++P SPP  +FT  I+HPNVY DGR+CISILH  G DP   E  +E W PV TVE            PN  SPANV+AA ++R   + +K++V   V RS++
Sbjct:   23 KKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.764e-28
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 524
            L +NP   F    V+E ++ EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDG++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   13 LIENPSENFKIS-VNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.412e-27
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 524
            +L  NP   F    V+E N+ EW V + GPPDTLYEGG F A + FP  YP  PP + FT+E+WHPN+Y DG++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   12 NLIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS 158          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   93 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   93 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            +P AG SA  + + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY +G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V RS E
Sbjct:   19 DPPAGVSASPIPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   93 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  +RD R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of DN617410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UB2R1_HUMAN3.670e-3448.53Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFB72.084e-2942.11Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP46.063e-2942.76Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK51.034e-2841.18Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST1.351e-2843.92Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFWA1.764e-2840.79Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM27.412e-2739.87Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC2_NECHA1.308e-2339.04Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_TRIHA2.232e-2338.36Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI3.807e-2339.04Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617410 ID=DN617410; Name=DN617410; organism=Citrus sinensis; type=EST; length=574bp
AGAGCCAATTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAG
GCAAGTCTCCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGT
TGCTGGGTTTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGA
GTGTTACAATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTC
AATGCCATTATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGT
GAAGTTTACAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTG
TCTGCATATCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAG
CTTGCAAGTGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTT
GAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATG
TCGAAGCTGCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAA
GTAGGCCGCTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAA
GCACTCTTTTTTCTCTACCTATGT
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