DN617410

Overview
NameDN617410
Unique NameDN617410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617410_ssr15 microsatellite DN617410_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:32..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 56/146 (38.36%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   93 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.108e-22
Identity = 56/146 (38.36%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   93 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP+VKF +E++HPNVY  G +C+ IL               RW P + V             PN  S ANVEA+  ++D R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   90 KNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 524
            ++P +G SA  + + N+ +W+  IIGP DT +E G F  ++SF   YPN PP VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEAA  ++D R  + K+V   V  S
Sbjct:   18 QDPPSGVSASPLPD-NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDIL-------------QNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENS 148          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.223e-22
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 524
            L ++P  G S G   + NI  W+  I GP DT +E G F   + F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN  AA+ +++ R +++K+V  CV +S
Sbjct:   16 LQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDIL-------------QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQS 148          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.209e-22
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   90 KNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            ++P AG SA  V + N+  W+  IIGP DT +E G F  ++SF   YPN PP VKF + ++HPNVY +G +C+ IL               RW P + V             PN+ SPAN EAA+  R+ + ++ ++V + V  S E
Sbjct:   18 QDPPAGVSASPVSD-NVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.497e-22
Identity = 54/141 (38.30%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  102 AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 524
            +G SA  + + N+  W+  IIGP DT +E G F  I+ F   YPN PP+VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEAA  ++D R  + K+V   V  S
Sbjct:   22 SGVSASPLPD-NVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDIL-------------QNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENS 148          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 51/132 (38.64%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  135 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            N+  W+  IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 51/132 (38.64%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  135 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            N+  W+  IIGP DT YE G F  ++ F  +YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 51/132 (38.64%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  135 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            N+  W+  IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 51/147 (34.69%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   84 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 524
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
The following BLAST results are available for this feature:
BLAST of DN617410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UBC2_ASPFU8.481e-2338.36Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_NEUCR1.108e-2238.36Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_CANAL1.447e-2237.93Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBCD6_DROME3.223e-2236.05Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_SCHPO4.209e-2236.73Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_DEBHA5.497e-2238.30Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_YEAST7.179e-2238.64Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_CANGA7.179e-2238.64Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO7.179e-2238.64Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBE2B_RAT9.376e-2234.69Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617410 ID=DN617410; Name=DN617410; organism=Citrus sinensis; type=EST; length=574bp
AGAGCCAATTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAG
GCAAGTCTCCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGT
TGCTGGGTTTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGA
GTGTTACAATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTC
AATGCCATTATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGT
GAAGTTTACAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTG
TCTGCATATCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAG
CTTGCAAGTGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTT
GAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATG
TCGAAGCTGCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAA
GTAGGCCGCTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAA
GCACTCTTTTTTCTCTACCTATGT
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