DN617405

Overview
NameDN617405
Unique NameDN617405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:83..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 5.940e-52
Identity = 96/138 (69.57%), Postives = 118/138 (85.51%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FGRKKTA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV GGGH +QIYA+RQ++AKALVA+Y KYVDEQSK+E+K+I   YD++LLVADPRR E KKFGG GARAR+QKSYR
Sbjct:    7 SVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 7.758e-52
Identity = 97/138 (70.29%), Postives = 115/138 (83.33%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KKTA AV + K G+GLIKING PI LV+PEILRFK +EP+ L+G  +F G+D+R++V GGGH SQ+YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    5 SVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.257e-51
Identity = 95/138 (68.84%), Postives = 116/138 (84.06%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F+ +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QKYVDEQSK E+K     YDRTLL+AD RR EPKKFGG+GAR+RFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 95/138 (68.84%), Postives = 115/138 (83.33%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGG+GARARFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADARRPEPKKFGGKGARARFQKSYR 143          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 95/138 (68.84%), Postives = 115/138 (83.33%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGARARFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARARFQKSYR 143          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 93/138 (67.39%), Postives = 114/138 (82.61%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KKTA AV + K G+GLIK+NG PI LV+PEILRFK +EP+ L+G  +F  +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDE SK E+K +   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    5 SVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.496e-50
Identity = 92/138 (66.67%), Postives = 115/138 (83.33%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            +VQ FG+KK A AV  C +G+GLIK+NG P++L  PEILR K +EPILLLG  +F  VD+R++V GGGH SQ+YA+RQ+IAKA+VA+Y KYVDE SK  +K  L+++DRTLLVADPRRCEPKKFGG+GAR+RFQKSYR
Sbjct:    5 AVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLLVADPRRCEPKKFGGKGARSRFQKSYR 142          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-50
Identity = 93/138 (67.39%), Postives = 115/138 (83.33%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGAR+RFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRFQKSYR 143          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 3.604e-49
Identity = 90/138 (65.22%), Postives = 114/138 (82.61%), Query Frame = -2
Query:  207 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 620
            SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK L+A++QK+VDEQSK E+K     YDRTLL+AD R  EPKKFGG+GAR+R+QKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLLIADSRMPEPKKFGGKGARSRYQKSYR 143          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.604e-49
Identity = 89/137 (64.96%), Postives = 117/137 (85.40%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            VQ  G+K+TAVAV Y   G+GLIK+NG P+E ++P+ L+ K +EP+L++G+  F+ VD+R+RV+GGG  +QIYAIRQ+IAK++VA++QKYVDE+SK EIK  ++ YDR+LLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   11 VQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLLVADPRRCEPKKFGGRGARARFQKSYR 147          
The following BLAST results are available for this feature:
BLAST of DN617405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS16_CAEEL5.940e-5269.5740S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_CANAL7.758e-5270.2940S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_YEAST2.257e-5168.8440S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_CANGA6.567e-5168.8440S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_ASHGO6.567e-5168.8440S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_DEBHA1.120e-5067.3940S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_NEUCR2.496e-5066.6740S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_KLULA3.259e-5067.3940S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_SACEX3.604e-4965.2240S ribosomal protein S16 OS=Saccharomyces exiguus... [more]
RS16_DICDI3.604e-4964.9640S ribosomal protein S16 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617405 ID=DN617405; Name=DN617405; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTCAGTATAAACAGAAATCACTTCTTCATTCAAAAGCAAATA
TAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAATAACAAT
AACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATCCTTCAA
TAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACCTCTGTT
TCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCGTCCTCCGA
ACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTCCTATCG
TACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTCCACGTA
CTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTATAGCGT
AGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATGTCTACT
CCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGCCTTGAA
ACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGATCTTGA
TCAAGCCGCGGCCGCGCTTGCAGTANGTTACTGCCACCGCCGTCTTCTTG
CGGCCGAAGCATTGCACGGAC
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