DN617405

Overview
NameDN617405
Unique NameDN617405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:83..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.877e-27
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KTA+A    + G+G ++IN  P+EL  PE+ R K  EP+ L G    N VD+ +RV GGG   Q  A R  IA+ LV       D  S  ++K+  V+YDRT+LV DPRR EPKK+GGRGARAR QKSYR
Sbjct:  158 GKRKTAIARGTIREGKGRVRINKVPVELYTPELARLKIMEPLKLAG-DVINDVDINVRVVGGGIVGQAEAARMVIARGLV-------DWTSDMDLKEKFVQYDRTMLVGDPRRSEPKKYGGRGARARRQKSYR 282          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METST (30S ribosomal protein S9P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps9p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.613e-27
Identity = 69/137 (50.36%), Postives = 83/137 (60.58%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            V   G++KTA+A    K G G +K+N  P+EL EPE+ R K FEP+ L G    N VD+ +RV GGG   Q  A R  IAK LV +            +KD  V+YDRT+LV DPRR E KKFGG GARAR QKSYR
Sbjct:    5 VHTSGKRKTAIARGTVKEGTGRVKVNRKPVELYEPELARLKIFEPLELAG-DIVNSVDINVRVVGGGIMGQAEAARMVIAKGLVEY-------TGDMNLKDRYVQYDRTMLVGDPRRSESKKFGGPGARARKQKSYR 133          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METKA (30S ribosomal protein S9P OS=Methanopyrus kandleri GN=rps9p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.513e-26
Identity = 60/137 (43.80%), Postives = 87/137 (63.50%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            VQ  G++KTA+A    + G G +++N  P+ ++EPE+ R K  EP+++ G    + VD+ ++V+GGG  SQ  A R +IA+ LV +           +++D  + YDR +L  DPRR EPKKFGGRGARAR QKSYR
Sbjct:    5 VQTTGKRKTAIARAVIREGEGRVRVNKRPVNIIEPEMARMKIMEPLIIAGEDIVSQVDIDVKVQGGGWMSQAEAARIAIARGLVEW-------TGDPDLRDAYMAYDRHMLKGDPRRKEPKKFGGRGARARRQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PYRHO (30S ribosomal protein S9P OS=Pyrococcus horikoshii GN=rps9p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.598e-26
Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            +Q  G++KTA+A    + GRG ++ING P+E++EPEI RF   EP++L G   +N VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QKSYR
Sbjct:    4 IQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PYRAB (30S ribosomal protein S9P OS=Pyrococcus abyssi GN=rps9p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.598e-26
Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            +Q  G++KTA+A    + G+G ++ING P+ELVEPEI RF   EP++L G   +N VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QKSYR
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PYRFU (30S ribosomal protein S9P OS=Pyrococcus furiosus GN=rps9p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.550e-26
Identity = 60/139 (43.17%), Postives = 88/139 (63.31%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            +Q  G++KTA+A    + G+G ++ING P+E++EPEI RF   EP++L G   +N VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QKSYR
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEW-------TGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_THEVO (30S ribosomal protein S9P OS=Thermoplasma volcanium GN=rps9p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KTAVA    K+G+G+I ING P EL   E+LR K  EP+  L   +  G+D+ ++VKGGG T Q  A R +IA+ +V F Q         E++++  +YDRTL+V D R   PKK GGRGARA+ QKSYR
Sbjct:    8 GKRKTAVARAVVKKGKGIITINGTPAELYPVEVLRNKILEPV-KLAEDKAKGIDVTVKVKGGGVTGQADASRTAIARGIVKFLQ-------DNELENLFRQYDRTLIVNDVRIKLPKKPGGRGARAKKQKSYR 132          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_HALSA (30S ribosomal protein S9P OS=Halobacterium salinarium GN=rps9p PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 8.938e-24
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G+KKTAVA      G G ++IN  P+ELVEPE+ R K  EP  + G      VD+ I V GGG   Q  A+R +IA+ LV  Y          E++D    +DR+LLV D R+ E KK+GG GARAR+QKSYR
Sbjct:    7 GKKKTAVARATVSDGEGRVRINSQPVELVEPEMARLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHY-------GDAELRDAFREFDRSLLVNDVRQRESKKWGGPGARARYQKSYR 132          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_THEAC (30S ribosomal protein S9P OS=Thermoplasma acidophilum GN=rps9p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 61/133 (45.86%), Postives = 89/133 (66.92%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KTAVA    K+G+G++ ING P+EL    +LR K  EP LL+   +   +D+ ++V+GGG T Q  A R +IA+A+V    KY+++    E++++  +YDRTL+V D R   PKK GGRGARA+ QKSYR
Sbjct:    5 GKRKTAVARAVAKKGKGIVTINGYPVELYPVRVLRNKIMEP-LLIAEDKAKDLDIAVKVRGGGVTGQADASRTAIARAIV----KYLNDT---ELENLFRQYDRTLIVNDVRIKLPKKAGGRGARAKKQKSYR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_HALMA (30S ribosomal protein S9P OS=Haloarcula marismortui GN=rps9p PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.601e-23
Identity = 58/133 (43.61%), Postives = 82/133 (61.65%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G+KKTAVA    + G G ++I+  P+ELV+PE+ + K  EP  +        VD+ + V+GGG   Q  A R +IA+ L       VD  +  E++D  + +DR+LLV D R+ EPKK+GG GARAR+QKSYR
Sbjct:    7 GKKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVEGGGVMGQADAARTAIARGL-------VDHTNDAELRDAFMEFDRSLLVNDVRQSEPKKWGGPGARARYQKSYR 132          
The following BLAST results are available for this feature:
BLAST of DN617405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RLSX_METTH3.877e-2749.62Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RS9_METST6.613e-2750.3630S ribosomal protein S9P OS=Methanosphaera stadtm... [more]
RS9_METKA2.513e-2643.8030S ribosomal protein S9P OS=Methanopyrus kandleri... [more]
RS9_PYRHO5.598e-2643.8830S ribosomal protein S9P OS=Pyrococcus horikoshii... [more]
RS9_PYRAB5.598e-2644.6030S ribosomal protein S9P OS=Pyrococcus abyssi GN=... [more]
RS9_PYRFU9.550e-2643.1730S ribosomal protein S9P OS=Pyrococcus furiosus G... [more]
RS9_THEVO3.072e-2447.3730S ribosomal protein S9P OS=Thermoplasma volcaniu... [more]
RS9_HALSA8.938e-2446.6230S ribosomal protein S9P OS=Halobacterium salinar... [more]
RS9_THEAC1.991e-2345.8630S ribosomal protein S9P OS=Thermoplasma acidophi... [more]
RS9_HALMA2.601e-2343.6130S ribosomal protein S9P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617405 ID=DN617405; Name=DN617405; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTCAGTATAAACAGAAATCACTTCTTCATTCAAAAGCAAATA
TAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAATAACAAT
AACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATCCTTCAA
TAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACCTCTGTT
TCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCGTCCTCCGA
ACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTCCTATCG
TACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTCCACGTA
CTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTATAGCGT
AGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATGTCTACT
CCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGCCTTGAA
ACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGATCTTGA
TCAAGCCGCGGCCGCGCTTGCAGTANGTTACTGCCACCGCCGTCTTCTTG
CGGCCGAAGCATTGCACGGAC
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