DN617405

Overview
NameDN617405
Unique NameDN617405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:83..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METJA (30S ribosomal protein S9P OS=Methanocaldococcus jannaschii GN=rps9p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.436e-23
Identity = 61/135 (45.19%), Postives = 82/135 (60.74%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 605
            G++K A+A    + G+G I+IN  PIEL+EP+  R K  EPILL G    + +D+ + VKGGG   Q+ A R +I KA+V F          KE++D  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    9 GKRKRAIARAVAREGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMDIDVTVKGGGVMGQMDAARTAIGKAIVEF-------TGSKELRDKFLAYDRTLLVSDARRTEPHKPSRSTKGPRAKRQKSYR 136          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METTP (30S ribosomal protein S9P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps9p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            V   G+KKTA+A    K G+G I+IN  P+E++EP + R K  EP+++     F+ VD+ + V GGG   Q  A+R ++A+ ++ +            +K+    YDR LLV+D R+ E KKFGG GARA++QKSYR
Sbjct:    4 VNSSGKKKTAIARATFKEGKGRIRINNVPLEIIEPALARMKMMEPVIMAAE-AFSSVDVDVSVMGGGVMGQADAVRTALARGILEW-------TGDAALKEAYAEYDRNLLVSDHRQKEKKKFGGLGARAKYQKSYR 132          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PYRKO (30S ribosomal protein S9P OS=Pyrococcus kodakaraensis GN=rps9p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            +Q  G++KTAVA    + G+G ++IN  P+E++EPEI RF   EP++L G    + VD+ ++V+GGG   Q  A R +IA+ALV +        +   +K+  ++YDRT+LV D RR EP K     +G RA+ QKSYR
Sbjct:    4 IQTAGKRKTAVARATIREGKGRVRINHKPVEIIEPEIARFTIMEPLILAGEEIVSRVDIDVKVEGGGFMGQAEAARVAIARALVEW-------TNDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.202e-22
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KT++A    K G G + IN  P+E ++ E+ + K  EP+LL+G      VD+R+ V GGG+ SQ  A+R +IA+ LV F+       +  E+K +   YDR +L  DPR+ EPKK+G   AR R+QKSYR
Sbjct:   16 GKRKTSIARAVIKPGIGRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSGDPRQTEPKKWGRYSARRRWQKSYR 140          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_AERPE (30S ribosomal protein S9P OS=Aeropyrum pernix GN=rps9p PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.202e-22
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ---------KYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++K A+A    + GRG + ING P+E+   E+ R K  EP+L+ G    + VD+R+RV+GGG   Q  A+R +IA+ LV F++         + +D+ S ++++   + +DRT+LV DPRR EP+K+    AR R+QKSYR
Sbjct:   11 GKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS-RDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 151          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METM7 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps9p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.875e-22
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            V   G+++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METM5 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps9p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            V   G+++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSDIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METVS (30S ribosomal protein S9P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            V   G+++TA+A      G G I+IN  P+EL+EP+ ++ K  EP++L G      +D+ + VKGGG  SQ+ A R ++ KA++ F         K E+K++ + YDRTLLV+D RR EP K     +G RAR QKSYR
Sbjct:    4 VHTVGKRRTAIARATATEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EILGSIDVDVDVKGGGTVSQMDAARTALGKAIIEF-------TGKMELKEMFLSYDRTLLVSDARRTEPHKPSKSSKGPRARRQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METMP (30S ribosomal protein S9P OS=Methanococcus maripaludis GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            V   G+++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K ++K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMDLKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METAC (30S ribosomal protein S9P OS=Methanosarcina acetivorans GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            V   G+ KTA A     +G G ++IN  P+EL  PE+   K  EP+L+ G    +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GARA++QKSYR
Sbjct:    5 VNSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGNDVVSGLDINVDVRGGGIIGQANAVRTAVARGIVEW-------TNDTAIRDNFAAYDRNLLVSDSRQKESKNFGGPGARAKYQKSYR 134          
The following BLAST results are available for this feature:
BLAST of DN617405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS9_METJA4.436e-2345.1930S ribosomal protein S9P OS=Methanocaldococcus ja... [more]
RS9_METTP5.794e-2340.8830S ribosomal protein S9P OS=Methanosaeta thermoph... [more]
RS9_PYRKO9.882e-2341.7330S ribosomal protein S9P OS=Pyrococcus kodakaraen... [more]
RS9_DESK12.202e-2242.1130S ribosomal protein S9P OS=Desulfurococcus kamch... [more]
RS9_AERPE2.202e-2240.1430S ribosomal protein S9P OS=Aeropyrum pernix GN=r... [more]
RS9_METM72.875e-2243.1730S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METM53.755e-2243.1730S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METVS6.405e-2241.7330S ribosomal protein S9P OS=Methanococcus vanniel... [more]
RS9_METMP6.405e-2242.4530S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METAC6.405e-2240.1530S ribosomal protein S9P OS=Methanosarcina acetiv... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617405 ID=DN617405; Name=DN617405; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTCAGTATAAACAGAAATCACTTCTTCATTCAAAAGCAAATA
TAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAATAACAAT
AACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATCCTTCAA
TAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACCTCTGTT
TCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCGTCCTCCGA
ACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTCCTATCG
TACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTCCACGTA
CTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTATAGCGT
AGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATGTCTACT
CCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGCCTTGAA
ACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGATCTTGA
TCAAGCCGCGGCCGCGCTTGCAGTANGTTACTGCCACCGCCGTCTTCTTG
CGGCCGAAGCATTGCACGGAC
back to top