DN617405

Overview
NameDN617405
Unique NameDN617405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:83..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_META3 (30S ribosomal protein S9P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 61/139 (43.88%), Postives = 83/139 (59.71%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            V   G++KTA+A    K G+G I+IN  PIE+VEP+ +  K  EPI+L G    +G+D+ I V GGG   Q+ A R ++ KA+V F           E+KD  V YDRT+L++D RR EP K     +G RA+ QKSYR
Sbjct:    4 VHTVGKRKTAIARATAKEGKGRIRINKKPIEIVEPKYINAKLMEPIILAG-DVVDGIDIDITVNGGGIVGQMDAARTALGKAIVEF-------TGDMELKDRFVHYDRTILISDARRTEPHKPSKSTKGPRAKRQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METMA (30S ribosomal protein S9P OS=Methanosarcina mazei GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G+ KTA A     +G G ++IN  P+EL  PE+   K  EP+L+ G+   +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GAR+++QKSYR
Sbjct:    9 GKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGKDVVSGLDINVDVRGGGIVGQANAVRTAVARGIVEW-------TNDTTIRDNFAAYDRNLLVSDSRQKEAKNFGGPGARSKYQKSYR 134          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_THESM (30S ribosomal protein S9P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 617
            +Q  G++K+AVA    K G G +++N  P+E++EPEI RF   EP+++ G      VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV D RR EP K     +G RA+ QKSYR
Sbjct:   12 IQTAGKRKSAVARATIKEGNGRVRVNYKPVEILEPEIARFTIMEPLVIAGEEILGKVDVDVKVEGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 143          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_ARCFU (30S ribosomal protein S9P OS=Archaeoglobus fulgidus GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KTA A    K G+G ++IN  P+E+ +PE+ R K  EP L++ +     VD+ ++  GGG  +Q  A R +IA+AL+ F          +E++   + YDRTLLV D RR  PK  GGRGARAR Q SYR
Sbjct:   11 GKRKTATARAVIKPGKGRVRINSVPVEIHQPELARMKIMEP-LIIAKELAEKVDIEVKTWGGGFMAQAEAARTAIARALLEF-------SGDEELRKAFLEYDRTLLVNDVRRKLPKIQGGRGARARRQTSYR 135          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PICTO (30S ribosomal protein S9P OS=Picrophilus torridus GN=rps9p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 61/133 (45.86%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KTA+A    ++G G   ING PIEL   EILR K  EPI +LG  R   +D+ + V GGG+T Q  A R ++AKA++ +++   D   + EI+     YDR++LV D RR  PKK  G GARA+ QKSYR
Sbjct:    9 GKRKTAIARAIIRKGSGKFLINGYPIELYPIEILREKMLEPIRILG-DRSKEIDIDVNVHGGGNTGQADATRTAMAKAIIEYFK---DSDLEAEIR----AYDRSMLVNDVRRKMPKKPMGYGARAKRQKSYR 133          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PYRAE (30S ribosomal protein S9P OS=Pyrobaculum aerophilum GN=rps9p PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 58/133 (43.61%), Postives = 82/133 (61.65%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G+KKTAVA    K G G ++ING P+EL   E+ R K  EP++L G      VD+ + V GGG+  Q  A+R ++A+ LVAF+Q        +E+K++  RYD  +L  DPRR E KK G + AR++ QK+YR
Sbjct:   18 GKKKTAVARAIIKPGIGRVRINGYPLELWPIEMARIKMSEPLILAG-ELAKKVDIDVNVSGGGYMGQAVAVRIAMARGLVAFFQ-------SQELKELYERYDPYMLKGDPRRTEHKKPGIKHARSKRQKAYR 142          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_SULAC (30S ribosomal protein S9P OS=Sulfolobus acidocaldarius GN=rps9p PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.131e-18
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = -2
Query:  207 FGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 608
            + R+K+A A  Y K G G + +N  PIE++  E++R+K  EP++L G    + ++ RI  +GGG   Q  A R ++A+ALV F        + KE+ +I   YDRT+L  DPR+ E +K+    AR   QK+YR
Sbjct:   12 YARRKSARASCYIKPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAGDKITSSIEARIYTQGGGIMGQADAARMALARALVKF-------TNSKELVEIYKSYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR 138          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_SULTO (30S ribosomal protein S9P OS=Sulfolobus tokodaii GN=rps9p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = -2
Query:  207 FGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 608
            + R+K A A  Y   G+G + +N  P+E++  E++R K  EP+LL G    + +D +I V+GGG   Q  A R ++A+ALV F          KE+++I   YDRT+L  DPR+ E +K+    AR   QK+YR
Sbjct:   11 YARRKMARARCYITPGKGRVFVNDIPLEIIPMEVVRMKIMEPLLLAGEKISSSIDAKIYVEGGGVMGQADAARMALARALVKF-------TGSKELEEIYKVYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR 137          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_SULSO (30S ribosomal protein S9P OS=Sulfolobus solfataricus GN=rps9p PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = -2
Query:  207 RKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 602
            R+KTA A  Y   G+G + +N  PIEL+  E++R K  EP+LL G    + +D +I   GGG   Q  A R ++A+ALV F          KE++ I   YDRT+L  DPR+ E +K+    AR   QKSYR
Sbjct:   13 RRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKF-------TGSKELEKIYRAYDRTMLAGDPRQTESEKWMRYSARRWRQKSYR 137          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLL2 (30S ribosomal protein S9 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G + IN  P+E   + E+ R KA  P+ L    R    D+++ V+GGG T Q  A+   IA+AL  F     DE  +  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    5 IDTVGRRKTSVARVFMTPGKGRVIINKLPVEEYFKDEVRRSKALRPLALT--ERTEEFDIKVNVQGGGITGQSGAVSLGIARALTEF-----DETVRPILKT------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
The following BLAST results are available for this feature:
BLAST of DN617405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS9_META36.405e-2243.8830S ribosomal protein S9P OS=Methanococcus aeolicu... [more]
RS9_METMA8.366e-2239.8530S ribosomal protein S9P OS=Methanosarcina mazei ... [more]
RS9_THESM2.434e-2140.2930S ribosomal protein S9P OS=Thermococcus sibiricu... [more]
RS9_ARCFU2.434e-2142.8630S ribosomal protein S9P OS=Archaeoglobus fulgidu... [more]
RS9_PICTO5.423e-2145.8630S ribosomal protein S9P OS=Picrophilus torridus ... [more]
RS9_PYRAE7.082e-2143.6130S ribosomal protein S9P OS=Pyrobaculum aerophilu... [more]
RS9_SULAC1.131e-1838.0630S ribosomal protein S9P OS=Sulfolobus acidocalda... [more]
RS9_SULTO1.477e-1838.0630S ribosomal protein S9P OS=Sulfolobus tokodaii G... [more]
RS9_SULSO2.519e-1840.9130S ribosomal protein S9P OS=Sulfolobus solfataric... [more]
RS9_CHLL25.435e-1337.6830S ribosomal protein S9 OS=Chlorobium limicola (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617405 ID=DN617405; Name=DN617405; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTCAGTATAAACAGAAATCACTTCTTCATTCAAAAGCAAATA
TAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAATAACAAT
AACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATCCTTCAA
TAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACCTCTGTT
TCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCGTCCTCCGA
ACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTCCTATCG
TACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTCCACGTA
CTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTATAGCGT
AGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATGTCTACT
CCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGCCTTGAA
ACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGATCTTGA
TCAAGCCGCGGCCGCGCTTGCAGTANGTTACTGCCACCGCCGTCTTCTTG
CGGCCGAAGCATTGCACGGAC
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