DN617405

Overview
NameDN617405
Unique NameDN617405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLTE (30S ribosomal protein S9 OS=Chlorobium tepidum GN=rpsI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.211e-12
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G I +N  P+E   + E  R +A +P+ +  +   N  D+ I VKGGG T Q  A+  +IA+ALV F     DE  +  +     R DR LL  DPR  E KK+G + AR  FQ S R
Sbjct:    5 IDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLAVAEKQ--NDFDITINVKGGGLTGQSGAVSLAIARALVEF-----DESIRAAL-----RPDR-LLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_SYNFM (30S ribosomal protein S9 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            G++KTAVA  + K G G + IN   IE  ++ E  +   ++P++L G   F  +D+ + V GGG + Q  AIR  I+KAL+ F           E +++L R     L  D R  E KK+G R ARARFQ S R
Sbjct:   10 GKRKTAVARVWLKPGSGSVTINKRTIEEYIDRETSKMVIYQPLVLTGT--FGKLDVTVNVLGGGGSGQAGAIRHGISKALLEF---------NPEFREVLKR--AGFLTRDSRVKERKKYGRRSARARFQYSKR 130          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PELLD (30S ribosomal protein S9 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 49/138 (35.51%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G + IN  P+E     E+ R  A  P++L    +    D+++ VKGGG + Q  A+   IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR  FQ S R
Sbjct:    5 IDTVGRRKTSVARVFMTPGKGRVIINKLPVEEYFRDEVKRLHALRPLVLT--EKTEDFDIKVNVKGGGLSGQSGAVSLGIARALTEF-----DEAARAVLKQ------ERLLTRDPRMVERKKFGRKKARKSFQFSKR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLPD (30S ribosomal protein S9 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 49/138 (35.51%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G + IN  P E     E+ R +A  P+ L    +    D+++ V GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    5 IDTVGRRKTSVARVFMSPGKGRVIINKLPAEEYFRDEVKRQQALRPLALT--EKMEDFDIKVNVHGGGVSGQTGAVSLAIARALTEF-----DESARAVLKK------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PELPB (30S ribosomal protein S9 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G + +N  PIE   + E  R +A  P+++    R    D++I V+GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    5 IDTVGRRKTSVARAFMIPGKGRVIVNKLPIEEYFKDEFKRQQALRPLVIT--ERAEEFDIKINVQGGGVSGQSGAVSLAIARALTEF-----DETARVILKT------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLP8 (30S ribosomal protein S9 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G I +N  P+E   + E  R +A +P++   +   +  D+++ VKGGG T Q  A+  +IA+ALV F     DE  +  ++         LL  DPR  E KK+G + AR  FQ S R
Sbjct:    5 IDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLVTAEKQ--DEFDIKVNVKGGGLTGQSGAVCLAIARALVEF-----DESIRPTLR------TERLLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_METI4 (30S ribosomal protein S9 OS=Methylacidiphilum infernorum (isolate V4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEIL-RFKAFEPI-LLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +Q  GR+KTA A    K G+G + ING  +E   P  + R++ F+P+ ++ G  +F   D+  + +GGG   Q  A++ ++++AL+ +   Y     K+            LL  DPR  E KK G  GAR RFQ S R
Sbjct:   12 IQATGRRKTATATVILKPGKGEVSINGKDLEFYFPTFVHRYEVFKPLEVIEGTKKF---DIIAKARGGGLMGQAQALKLAVSRALIKYDPSYRSLLKKE-----------GLLTRDPRMKERKKTGQPGARKRFQFSKR 136          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLCH (30S ribosomal protein S9 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 49/138 (35.51%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  207 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 617
            +   GR+KT+VA  +   G+G + +N  P+E   + E  R +A  P+ L    +    D++I V+GGG + Q  A+  +IA+AL          +S + ++ +L R +R LL  DPR  E KKFG + AR RFQ S R
Sbjct:    5 IDTVGRRKTSVARAFLTPGKGTVTVNKRPVEEYFKDEFKRQQALRPLTLC--EKAEEFDVKINVQGGGLSGQSGAVSLAIARALT---------ESDEALRAVL-RTER-LLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_PETMO (30S ribosomal protein S9 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVE----PEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            GR+KTAVA  + + G G IKING   + LVE     E+   +A +P+ +   +     D+ IRV GGG + Q  AIR  IA+AL+++     DE  +  +K         LL  DPR  E KK+G R AR R Q S R
Sbjct:   11 GRRKTAVARVHLRPGNGKIKINGKEYKSLVEYLRGNEVWEIEALKPLTVTSTN--GQFDLVIRVNGGGLSGQAGAIRLGIARALLSY-----DESFRPILK------KEGLLTRDPREVERKKYGLRKARKRAQFSKR 135          
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_GRAFK (30S ribosomal protein S9 OS=Gramella forsetii (strain KT0803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = -2
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            GR+KTAVA  Y   G+G I +N   + +      L +K  +P++L         D++I V GGG T Q  AIR ++++A+VA     +DE++   +K         LL  DPR  E KK+G + AR +FQ S R
Sbjct:    8 GRRKTAVARVYVSEGKGNITVNKKDLKDYFTTGTLLYKVNQPMMLTENE--GNFDVKINVYGGGITGQAEAIRLALSRAMVA-----LDEENHGALK------PEGLLTRDPRMVERKKYGQKKARKKFQFSKR 128          
The following BLAST results are available for this feature:
BLAST of DN617405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS9_CHLTE1.211e-1238.4130S ribosomal protein S9 OS=Chlorobium tepidum GN=... [more]
RS9_SYNFM1.581e-1238.0630S ribosomal protein S9 OS=Syntrophobacter fumaro... [more]
RS9_PELLD2.697e-1235.5130S ribosomal protein S9 OS=Pelodictyon luteolum (... [more]
RS9_CHLPD4.601e-1235.5130S ribosomal protein S9 OS=Chlorobium phaeobacter... [more]
RS9_PELPB7.848e-1236.2330S ribosomal protein S9 OS=Pelodictyon phaeoclath... [more]
RS9_CHLP81.025e-1134.7830S ribosomal protein S9 OS=Chlorobaculum parvum (... [more]
RS9_METI41.748e-1133.8130S ribosomal protein S9 OS=Methylacidiphilum infe... [more]
RS9_CHLCH3.895e-1135.5130S ribosomal protein S9 OS=Chlorobium chlorochrom... [more]
RS9_PETMO5.087e-1139.1330S ribosomal protein S9 OS=Petrotoga mobilis (str... [more]
RS9_GRAFK5.087e-1135.8230S ribosomal protein S9 OS=Gramella forsetii (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617405 ID=DN617405; Name=DN617405; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTCAGTATAAACAGAAATCACTTCTTCATTCAAAAGCAAATA
TAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAATAACAAT
AACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATCCTTCAA
TAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACCTCTGTT
TCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCGTCCTCCGA
ACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTCCTATCG
TACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTCCACGTA
CTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTATAGCGT
AGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATGTCTACT
CCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGCCTTGAA
ACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGATCTTGA
TCAAGCCGCGGCCGCGCTTGCAGTANGTTACTGCCACCGCCGTCTTCTTG
CGGCCGAAGCATTGCACGGAC
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