DN617405

Overview
NameDN617405
Unique NameDN617405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLTB (30S ribosomal protein S9 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = -2 
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG    N  D+ IRV GGG   Q+ A R  +A+A++         Q K++IK  L    +  L  DPR+ E KK+G + AR  FQ S R
Sbjct:    9 GRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGD--VNSFDLIIRVSGGGVQGQVIATRLGLARAVL---------QEKEDIKQELKA--QGFLTRDPRKKERKKYGRKKARKSFQFSKR 129
[Close]
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLT2 (30S ribosomal protein S9 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = -2 
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG    N  D+ IRV GGG   Q+ A R  +A+A++         Q K++IK  L    +  L  DPR+ E KK+G + AR  FQ S R
Sbjct:    9 GRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGD--VNSFDLIIRVSGGGVQGQVIATRLGLARAVL---------QEKEDIKQELKA--QGFLTRDPRKKERKKYGRKKARKSFQFSKR 129
[Close]
BLAST of DN617405 vs. ExPASy Swiss-Prot
Match: RS9_CHLAB (30S ribosomal protein S9 OS=Chlamydophila abortus GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = -2 
Query:  207 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 605
            GR+K AV+    + G G I +NG   +   P EI R     P+ +LG    N  D+ IR+ GGG   Q+ A R  +A+AL+   +K VD  SK+E+K          L  DPR+ E KK+G + AR  FQ S R
Sbjct:   13 GRRKQAVSSVRLRPGTGKIDVNGKAFDEYFPLEIQRVTILSPLKVLGYS--NDFDLVIRINGGGIQGQVIATRLGLARALL---KKNVD--SKQELK------SHGFLTRDPRKKERKKYGHKKARKSFQFSKR 133
The following BLAST results are available for this feature:
BLAST of DN617405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS9_CHLTB6.644e-1136.5730S ribosomal protein S9 OS=Chlamydia trachomatis ... [more]
RS9_CHLT26.644e-1136.5730S ribosomal protein S9 OS=Chlamydia trachomatis ... [more]
RS9_CHLAB8.677e-1138.0630S ribosomal protein S9 OS=Chlamydophila abortus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617405 ID=DN617405; Name=DN617405; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTCAGTATAAACAGAAATCACTTCTTCATTCAAAAGCAAATA
TAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAATAACAAT
AACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATCCTTCAA
TAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACCTCTGTT
TCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCGTCCTCCGA
ACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTCCTATCG
TACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTCCACGTA
CTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTATAGCGT
AGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATGTCTACT
CCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGCCTTGAA
ACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGATCTTGA
TCAAGCCGCGGCCGCGCTTGCAGTANGTTACTGCCACCGCCGTCTTCTTG
CGGCCGAAGCATTGCACGGAC
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