DN617404

Overview
NameDN617404
Unique NameDN617404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9470 contig Csv1_Contig9470:34..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   30 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 578
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVE-SPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 55/171 (32.16%), Postives = 79/171 (46.20%), Query Frame = 3
Query:  102 LLTGSLDETVKLWRPDD----MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            +++GS D+  K+W  +       L     G   GV SVA  P G + A+ SLD+ VR++D  T   +   E     V+ + F P G +LA +G    S+KLWD         LS  R         +  K FVLSVA+SPDG  +  GS D ++  +D         L+ H
Sbjct:  384 IVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLA-SGSLDKSLKLWD---------LSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQGH 544          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   30 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 578
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVE-SPINQIGFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 3
Query:   33 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 569
            E+ H + V  V + P   + P ++  G  D TVK+W   + +L+  + GH   + +V   P G +  S   DS   ++D++   ++ TLE +   +  + F P    L VA G   S+K+WD A    +  L   RPE + PT K+   +  LS+AWS DG+ +  G  D TI V+ V+
Sbjct:  145 EDGHTDWVSCVRFSP-NHSNPIIVSCG-WDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHN-DIINALCFSPNRYWLCVAYG--PSIKIWDLACKKTVEEL---RPEVVSPTSKADQPQ-CLSLAWSTDGQTLFAGYSDNTIRVWQVS 314          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 3
Query:   30 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 569
            + NAH++S+  + + P        + +GS D ++K+WR D +  E+T  GH LG+   +      +  S S D  V+VFDV +   + TL+   + V+   F+P GT +A +G    ++++W     N I   SIP  E             V SV ++ DG  +A GS DG + ++D T
Sbjct:  102 IPNAHKKSISGIKFSPDGR----YMGSGSADCSIKIWRMDFVY-EKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIA-SGSFDETIRIWCARNGNTI--FSIPGHEDP-----------VSSVCFNRDGAYLASGSYDGIVRIWDST 262          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  162 ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLES 599
            + T     L + SV   P G + A+ + D  +R++D+ T   I  L     +++ + F P G  L V+G G  SV++WD  T     TLSI              +  V +VA SPDG+ IA GS+D T+ V+D T    +  L+S
Sbjct:  250 DNTTASGDLYIRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRL-VSGSGDRSVRIWDLRTSQCSLTLSI--------------EDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVERLDS 380          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 59/202 (29.21%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            LK     H ++V AV + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  S S D  ++V+++ T  S+ TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L     P  S V
Sbjct:   64 LKFTLAGHTKAVSAVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 247          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 58/202 (28.71%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L     P  S V
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 58/202 (28.71%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L     P  S V
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 58/202 (28.71%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L     P  S V
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220          
The following BLAST results are available for this feature:
BLAST of DN617404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GBLP_LEICH1.118e-1328.96Guanine nucleotide-binding protein subunit beta-li... [more]
TUP1_DICDI1.461e-1332.16General transcriptional corepressor tupA OS=Dictyo... [more]
GBLP_LEIMA1.461e-1328.96Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DROME1.908e-1331.28Guanine nucleotide-binding protein subunit beta-li... [more]
YZLL_CAEEL3.254e-1330.00Uncharacterized WD repeat-containing protein K04G1... [more]
TUP1_CANAL5.551e-1332.19Transcriptional repressor TUP1 OS=Candida albicans... [more]
WDS_DROME7.250e-1329.21Protein will die slowly OS=Drosophila melanogaster... [more]
WDR5_XENTR1.237e-1228.71WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT1.237e-1228.71WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE1.237e-1228.71WD repeat-containing protein 5 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617404 ID=DN617404; Name=DN617404; organism=Citrus sinensis; type=EST; length=627bp
ACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAG
TCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCT
CTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACG
ACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCT
GTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAG
CTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCG
AAGCTTCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACC
ACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACAC
AGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGAC
TGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCA
TGGAGTCCTGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAAT
TTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGAAAGCC
ATTTCATGCCTGTGCGTTCTCTTGTTT
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