DN617404

Overview
NameDN617404
Unique NameDN617404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9470 contig Csv1_Contig9470:34..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 52/183 (28.42%), Postives = 87/183 (47.54%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 572
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA+ S +  + F P    L  A      +K+WD  +  ++  L +      + +D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFTPNRYWLCAA--TEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   93 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 560
            P  L++GS D T+ LW P +D +     TGH   +  V   P   + ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKL-------------STDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 49/175 (28.00%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  102 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            ++ GSL  +++LW  +  ++ RT  GH   + S+  HP G   AS S+DS ++++DV     +   +     V  + F P G  LA A   S +VKLWD     +I             T+ +S    V  V + P+   +A GS D T+ ++D+ +   +   E     VRS++
Sbjct:   78 VVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDS-TVKLWDLIAGKMI-------------TEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVL 238          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 3
Query:   36 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 572
            ++H + V  V + P    +P ++ +GS D TVK+W   + +L  T  GH   V + A  P G + AS   D  + ++D+     + +LE S S +  + F P    L  A    +S+K+WD  +  ++  L +  + E     + ++S K    +  S+ WS DG  +  G  DG I V+ + R
Sbjct:  147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLE-SGSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKVIYCTSLGWSADGSTLFSGYTDGLIRVWGIGR 325          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 54/175 (30.86%), Postives = 72/175 (41.14%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 566
            H   VW V   P +        +GS D T +LW  D     R   GH   V  V  HP+    A+ S D  VR++      S+         V  + F P G  LA A G    +KLWD A+  L   L          TD       + S+A+SPD   IA  SMD ++ V+D+
Sbjct:  383 HAYPVWDVDISPFS----LYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASA-GEDQRLKLWDLASGTLFKELR-------GHTDS------ITSLAFSPDSGLIASASMDNSVRVWDI 539          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 51/200 (25.50%), Postives = 88/200 (44.00%), Query Frame = 3
Query:   24 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSL 623
            K +   H   + +V + P+     +L+++ S D T+K+W  +  + ERT  GH   V  +    +G + AS S D  ++++D  T   + TL      V  ++F P G  L ++     ++K+W+ AT   I TL                + +V  +  S DG  IA  S D TI  +++ + + L     H   V  L
Sbjct:   99 KHILTGHRNCINSVKFHPSF----SLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLHGHDHNVSCVRFTPSGDQL-ISSSRDKTIKVWEAATGYCIKTL-------------VGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECL 280          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: FBXW7_DROME (F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 48/165 (29.09%), Postives = 77/165 (46.67%), Query Frame = 3
Query:   99 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 593
            L+++G+ D  VK+W P+  +   T  GH   V S+     G+   S SLD+ +RV+DV+T     TL    S    M+       + V+G   ++VK+WD  T   + TLS P       T    + +FV++             S DGT+ ++DV    F+ +L
Sbjct: 1127 LIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQF--DGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSGMELRQN---ILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFNSRFVVT------------SSDDGTVKLWDVKTGDFIRNL 1274          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 48/168 (28.57%), Postives = 74/168 (44.05%), Query Frame = 3
Query:   99 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            L+ TGS+D T KLW     +   T TGH   ++S++ + SG    + S D  V V++ DT   + TL    +E+    F+    +L + G    + KLWD      +ATL+    E             +L   +   G+ IA  S DGT  +F     + +  LE H
Sbjct:  191 LVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN-WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGH 344          

HSP 2 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 46/155 (29.68%), Postives = 75/155 (48.39%), Query Frame = 3
Query:   96 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 560
            +L+LTGS+D+T KLW   + +   T TGH   ++      +G + A+AS D   R+F   T   +  LE    E+ ++ F+P+G  L + G    + ++WD  T   +  L     EG   TD+      + S A++  G  I  GS D T  ++
Sbjct:  274 SLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRL-LTGSSDKTARIWDAQTGQCLQVL-----EG--HTDE------IFSCAFNYKGDIIITGSKDNTCRIW 414          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: REC14_SCHPO (Meiotic recombination protein rec14 OS=Schizosaccharomyces pombe GN=rec14 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 52/202 (25.74%), Postives = 81/202 (40.10%), Query Frame = 3
Query:   33 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSL 623
            ENAH+  ++++  V         L + S D  +K W   D +   +E  +T H LGV  +A      +  S      V V++ +TN    +      PSE W     P G T+A        + +WD              P   K ++  +  KF L + +SP+GR I  G   G + +      +  H L  H  PVRS+
Sbjct:   12 ENAHQADIYSLNVVAGN------LWSASGDSKIKKWSIGDAEHSLVEEIDTPHKLGVHHLATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSV-DGRIAVWDN-------------PSDCKISELDTKGKFGLCIDYSPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSV 193          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   93 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 560
            P  L++GS D T+ LW P + +   T  TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L   L     E             V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483          
The following BLAST results are available for this feature:
BLAST of DN617404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GBLP_BRANA2.332e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
NLE1_BOVIN3.046e-1129.30Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
KTNB1_DANRE3.046e-1128.00Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
GBLP_NICPL3.046e-1127.72Guanine nucleotide-binding protein subunit beta-li... [more]
TAF5L_MOUSE3.978e-1130.86TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
LIS1_DICDI5.195e-1125.50Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
FBXW7_DROME5.195e-1129.09F-box/WD repeat-containing protein 7 OS=Drosophila... [more]
WDR69_BOVIN6.785e-1128.57WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]
REC14_SCHPO6.785e-1125.74Meiotic recombination protein rec14 OS=Schizosacch... [more]
NLE1_PONAB6.785e-1129.94Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617404 ID=DN617404; Name=DN617404; organism=Citrus sinensis; type=EST; length=627bp
ACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAG
TCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCT
CTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACG
ACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCT
GTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAG
CTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCG
AAGCTTCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACC
ACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACAC
AGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGAC
TGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCA
TGGAGTCCTGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAAT
TTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGAAAGCC
ATTTCATGCCTGTGCGTTCTCTTGTTT
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