DN617402

Overview
NameDN617402
Unique NameDN617402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11722 contig Csv1_Contig11722:79..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_MICAN (ATP synthase subunit b' OS=Microcystis aeruginosa (strain NIES-843) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 34/137 (24.82%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  264 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            +FDF+ TLP++ ++F++L   L+ ++Y PL   +DER   I++  +  K+   + + L ++               + + + E Q    +++A  +K+             +QKE+  +SL+ Q+A+LS +I+ K+L
Sbjct:    1 MFDFDATLPVMALQFILLAVILNAVFYKPLSKVLDERAEYIRQTESGAKEQLAKTEALVQEYELQLSSARKQSQEIIAQAQAEAQKLASERVAAAQKEAIARKEAVAAEIAQQKEEAFRSLEGQVASLSRQILEKLL 137          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_SYNP6 (ATP synthase subunit b' OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 44/149 (29.53%), Postives = 72/149 (48.32%), Query Frame = 3
Query:  237 LAAEIEKAA---LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            LAAE  + A   LFD + TLP++ V+ LVL+F L+ ++Y P G  +D+RD  ++      K    EVK L  Q               + + + E      Q+LA  +++             +QK   +++LD Q+ ALS +I+ K+L
Sbjct:    7 LAAEAVQEAEGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKALTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEIDQQKAVALQALDQQVDALSHQILDKLL 155          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_SYNE7 (ATP synthase subunit b' OS=Synechococcus elongatus (strain PCC 7942) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 44/149 (29.53%), Postives = 72/149 (48.32%), Query Frame = 3
Query:  237 LAAEIEKAA---LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            LAAE  + A   LFD + TLP++ V+ LVL+F L+ ++Y P G  +D+RD  ++      K    EVK L  Q               + + + E      Q+LA  +++             +QK   +++LD Q+ ALS +I+ K+L
Sbjct:    7 LAAEAVQEAEGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKALTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEIDQQKAVALQALDQQVDALSHQILDKLL 155          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_CYAP7 (ATP synthase subunit b' OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 33/137 (24.09%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  264 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            +FDF+ TLP++ ++FLVL   L+ ++Y PLG  +D R + I+   N  ++   + + L ++               +   + + +   ++K+A  +K+             +QK++ + +L+ Q+ ALS +I+ K+L
Sbjct:    1 MFDFDATLPLMALQFLVLAVVLNAVFYKPLGKALDSRADYIRSNENQAREQLAKAQNLAQEYEKQLGDARRQSNEIIAAAQAQAKQIADEKIAQAQKEAQAQKEAAAKEIEQQKQEAMTALEQQVDALSRQILEKIL 137          
BLAST of DN617402 vs. ExPASy Swiss-Prot
Match: ATPX_ANTSP (ATP synthase subunit b', chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 39/140 (27.86%), Postives = 63/140 (45.00%), Query Frame = 3
Query:  255 KAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEEIVRKVL 674
            +  LFDFN TLP++ ++FL L   L+ IYY PLG  +DERD  I   L +      +   L ++               +   +++ Q  V  K+   +K               QKE  +++L+ Q+  LS +I  K+L
Sbjct:   18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSLTAASAALSKANDLTKRYEQDLAESRKKAQDIIKNAQQDAQNIVSSKIKEAQKDADQLMSNTYDQLNIQKEQALQNLEKQVDILSNQIQIKLL 157          
The following BLAST results are available for this feature:
BLAST of DN617402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATPX_MICAN1.204e-1124.82ATP synthase subunit b' OS=Microcystis aeruginosa ... [more]
ATPX_SYNP62.053e-1129.53ATP synthase subunit b' OS=Synechococcus sp. (stra... [more]
ATPX_SYNE72.053e-1129.53ATP synthase subunit b' OS=Synechococcus elongatus... [more]
ATPX_CYAP74.574e-1124.09ATP synthase subunit b' OS=Cyanothece sp. (strain ... [more]
ATPX_ANTSP5.974e-1127.86ATP synthase subunit b', chloroplastic OS=Antitham... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617402 ID=DN617402; Name=DN617402; organism=Citrus sinensis; type=EST; length=787bp
TTTCAGCAAACGCAAACGCAAAACTAGTAAAATTTCAATCTGCCATGGCT
AGCATGATCGTGGCATCCTCCAATGCCAAGCCACTCTCTCCACTGCCCAT
TACTTCTCAATCACCAAAACCCAGAATCCAAATCCCCCAAATCAAAATCC
CACAAAAGTTGCTTAAACTCTCCTCCTCCGCTCTCAAATCACTCTCCGCT
GTGGCCGTCACGTCGCTAGCATTTTCCCCTCCGTCTCTGGCAGCTGAAAT
CGAAAAGGCAGCACTCTTCGATTTCAACCTAACCTTGCCCATTATCATGG
TTGAGTTCTTGGTTCTGATGTTCGCGTTGGACAAGATTTACTACTCTCCC
CTCGGGAACTTCATGGACGAGAGGGACAATGCTATCAAGGAAAAGCTCAA
CAGCGTCAAGGACACTTCCGAGGAAGTGAAGCAGCTAGAAGAGCAAGCTG
CTGCCGTCATGAGGGCTGCCAGAGCGGAGATATCGGCGGCCTTGACTAAG
ATGAAGAAGGAGACTCAGTTGGAAGTTGAGCAGAAGCTTGCTGTGGGGAG
GAAGAAAATTGAGGCTGAGCTTCAGGAAGCTTTGGCTAATTTGGAGAGGC
AAAAGGAGGATACCATTAAGTCTCTTGACTCTCAGATTGCTGCTCTCAGT
GAAGAGATTGTCAGGAAGGTCCTTCCTGTTCAATAACTTTTTTTAAAAAA
AAAATTGTGTTGTTGATTTTGTGTTTATGAAATGACAGAATGTAATTGTA
ATACCTCCTTCACTTATATATATTTTTGTGACCTAAT
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