DN617396

Overview
NameDN617396
Unique NameDN617396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617396_ssr171 microsatellite DN617396_ssr171:171..182. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13169 contig Csv1_Contig13169:3..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR1_HUMAN (High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VAR+ AGP + ISFL+A  ASVL  LCY E  +R P   G AYLY+Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   40 LGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAGLCYGEFGARVPK-TGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARA 131          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_PIG (Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 540
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y    EL AF+    L+L Y IG +S+AR+ +  +  +L
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTLDELL 142          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR3_MOUSE (Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 522
            +GVG+++GAG++V+ G VA+D AGP + I FL+A  +SVL  LCYAE  +R P   G AYLY+Y    EL AF     L+L Y IG AS+AR+ +S
Sbjct:   40 LGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLAGLCYAEFGARVPGS-GSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSS 134          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_RAT (Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARA 133          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_MOUSE (Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARA 133          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_HUMAN (Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARA 133          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR3_HUMAN (Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 522
            +GVG+++GAG++V+ G VA+D AGP + I FL+A  +SVL  LCYAE  +R P   G AYLY+Y    EL AF     L+L Y IG AS+AR+ +S
Sbjct:   40 LGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLAGLCYAEFGARVPRS-GSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSS 134          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR3_RAT (Cationic amino acid transporter 3 OS=Rattus norvegicus GN=Slc7a3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 522
            +GVG+++GAG++V+ G VA++ AGP + I FL+A  +SVL  LCYAE  +R P   G AYLY+Y    EL AF     L+L Y IG AS+AR+ +S
Sbjct:   40 LGVGSTLGAGVYVLAGEVAKEKAGPSIVICFLVAALSSVLAGLCYAEFGARVPGS-GSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSS 134          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_DANRE (Low affinity cationic amino acid transporter 2 OS=Danio rerio GN=slc7a2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.716e-17
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VA+  +GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY+Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   40 LGVGSTLGAGVYVLAGEVAKGSSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYSYVTVGELWAFITGWNLILSYVIGTSSVARA 131          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: YHDG_BACSU (Uncharacterized amino acid permease yhdG OS=Bacillus subtilis GN=yhdG PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 540
            +G+GA +G GIFV+TGT A  AGPG+TISF++A  A +  AL YAE AS  P V G  Y + Y    EL AF++   L+L+Y +  ++++   + Y  S L
Sbjct:   36 LGIGAIIGTGIFVLTGTGAVTAGPGLTISFVVAALACLFAALSYAEFASSVP-VSGSVYTFTYATLGELMAFIIGWDLILEYMLAVSAVSVGWSGYFQSFL 135          
The following BLAST results are available for this feature:
BLAST of DN617396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CTR1_HUMAN2.026e-1850.54High affinity cationic amino acid transporter 1 OS... [more]
CTR2_PIG3.457e-1845.10Low affinity cationic amino acid transporter 2 OS=... [more]
CTR3_MOUSE4.515e-1850.00Cationic amino acid transporter 3 OS=Mus musculus ... [more]
CTR2_RAT4.515e-1848.39Low affinity cationic amino acid transporter 2 OS=... [more]
CTR2_MOUSE4.515e-1848.39Low affinity cationic amino acid transporter 2 OS=... [more]
CTR2_HUMAN4.515e-1848.39Low affinity cationic amino acid transporter 2 OS=... [more]
CTR3_HUMAN5.896e-1850.00Cationic amino acid transporter 3 OS=Homo sapiens ... [more]
CTR3_RAT1.314e-1748.96Cationic amino acid transporter 3 OS=Rattus norveg... [more]
CTR2_DANRE1.716e-1747.31Low affinity cationic amino acid transporter 2 OS=... [more]
YHDG_BACSU2.477e-1643.56Uncharacterized amino acid permease yhdG OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617396 ID=DN617396; Name=DN617396; organism=Citrus sinensis; type=EST; length=557bp
TTCATCTCCGACAATTAATAAAATTTATCAATCATGGGAGGTGAAAACGT
TCAGATCGAAAAAAGCAACAATAATTCGTCATCGTCATCATCACCATCTG
CGTCAGGTCCACCACCCACGTGTTTCTCTCATTTCTGGTCTTCAGCTCTC
CGAGCCAAAACCCTAACTGCTCCGTCCGTCCGTACAAATGATGGCGAAGG
ACTTTTACGGCGGCTCGGACTCTTCGAACTGGTGCTCATCGGCGTCGGCG
CGTCTGTTGGCGCCGGAATATTCGTTGTCACCGGTACCGTGGCTCGCGAC
GCCGGTCCAGGAGTTACAATTAGTTTCTTACTTGCTGGAGCAGCTTCTGT
GTTAAATGCACTCTGTTATGCTGAGCTGGCATCTCGTTTTCCTGCCGTTG
TTGGGGGAGCATACTTGTATGCGTATACAGCATTCAATGAACTTACAGCT
TTTCTTGTTTTTGCACAACTTATGTTGGACTACCATATTGGTGCAGCGAG
CATAGCACGAAGCTTAGCTAGCTATGTAGTTTCAATTTTGGAGCTCTTTC
CCTTTTT
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