DN617393

Overview
NameDN617393
Unique NameDN617393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:454..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.799e-46
Identity = 81/122 (66.39%), Postives = 104/122 (85.25%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KGIP++ T+D RTIRYPDPLIK NDTI++DL+  KITDFIKF+ GN+ MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG+KPWVSLP+GKG++L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.349e-46
Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KGIP++ T+D RTIRYPDPLIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 4.007e-46
Identity = 83/122 (68.03%), Postives = 102/122 (83.61%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            K IP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  134 KAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.597e-45
Identity = 79/122 (64.75%), Postives = 103/122 (84.43%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KGIP++ T+D RTIRYPDP+IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.430e-45
Identity = 81/122 (66.39%), Postives = 103/122 (84.43%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:  134 KGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 8.355e-44
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KGIP++ T+D RTIRYPDP+IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.355e-44
Identity = 85/122 (69.67%), Postives = 97/122 (79.51%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.425e-43
Identity = 85/122 (69.67%), Postives = 97/122 (79.51%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.425e-43
Identity = 85/122 (69.67%), Postives = 97/122 (79.51%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of DN617393 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.861e-43
Identity = 81/122 (66.39%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  275 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 640
            KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI D IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  134 KGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of DN617393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RS4X_DANRE1.799e-4666.3940S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MONDO2.349e-4667.2140S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO4.007e-4668.0340S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_ICTPU2.597e-4564.7540S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_DROME4.430e-4566.3940S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_MACFU8.355e-4463.1140S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4B_SCHPO8.355e-4469.6740S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4C_SCHPO1.425e-4369.6740S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.425e-4369.6740S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_CARGR1.861e-4366.3940S ribosomal protein S4 OS=Carabus granulatus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617393 ID=DN617393; Name=DN617393; organism=Citrus sinensis; type=EST; length=641bp
GGGGGGGGGTACCCATTTTTTTTTTTTTTTTAAAGAGATACATGAACTTA
GATTAAATAGTTGAAAATAACATCCACCAAATAGTAGCTAAAATAAAAAA
GGACAAAGCAGGTTCAAAATTGTGCTGATAAAATAAAAATAAAGATTCAT
TTTTGCATCCGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATT
CAACAAGAAAAAACAAAGCAGCAAAATGTATCCAAATTCATTGTAAAAGC
TTAAGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGG
ACAACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCC
TTCCCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAG
GGCATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGT
TCTTGATGATTCCAACCCGACCTCTGTTTCTACCCCCAGTGACCATGACA
ATATTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAA
GTCAAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGA
TGGTACGCCCATCATAGGTGTTGATGTATGGGATACCTTTC
back to top