DN617390

Overview
NameDN617390
Unique NameDN617390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12554 contig Csv1_Contig12554:52..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23
Identity = 84/286 (29.37%), Postives = 138/286 (48.25%), Query Frame = 3
Query:   39 SCINPSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTVD----RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVT-----------EPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKEN------------LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFIC-------DDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            SC++ S L +S +  K L  +    A+ +  + K +   +S     +  D    RR  ++  ++WD D +QSL + Y +++Y  RAE+L G+VK     ++           + + +L ++D+L+RLG+  HF+ E              Y++  EN            L +T+L  R LR HGYPVS +VF  FK     F C       ++ +G+L+L  AS  +  GE IM+EA  F++K+LKE +     K     ++ +    LE   H  +P LEAR +I
Sbjct:   13 SCLHKS-LISSTHELKAL--SRTIPALGMSRRGKSITPSISMSSTTVVTDDGVRRRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKNMFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYV------YSYWGENGIGCGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLNLFRASLIAFPGEKIMDEAEIFSTKYLKEAL----QKIPVSSLSREIGDVLEYGWHTYLPRLEARNYI 285          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.352e-23
Identity = 73/210 (34.76%), Postives = 115/210 (54.76%), Query Frame = 3
Query:  186 DRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLD----QLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            +R  A++ P IW   F+   +++  D   + + EELK +V+   K + EP+D    +L  ID +QRLG++YHFE E             + N    +LY T+L FRLLR+HG+ +S + F+ FKD+   F   +  D +G+L L+EASY  + GE I++EA  FT+  L   + T +       ++EQ   AL+  +   +P +EAR FI
Sbjct:   20 NRPKADFHPGIWGDMFIICPDTDI-DAATELQYEELKAQVR---KMIMEPVDDSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNN-NDADTDLYTTALRFRLLREHGFDISCDAFNKFKDEAGNFKASLTSDVQGLLELYEASYMRVHGEDILDEAISFTTAQLTLALPTLHHP-----LSEQVGHALKQSIRRGLPRVEARNFI 219          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22
Identity = 79/283 (27.92%), Postives = 142/283 (50.18%), Query Frame = 3
Query:   39 SCINPSTLATSVNGFKCLPLATNRAAIRIMAKNKP----VQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVK-----------TAIKDVTEPLDQLELIDNLQRLGLAYHFEPE--XXXXXXXXXXXXKDYNWRKENLY----ATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMM----ITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            SC++ S + ++ +  K  PL      + +  + K     V   ++T   +  + RR  +Y  ++WD DF+QSL++ Y + +Y+ RAE+L G+VK            ++  + + +++L ++D+++RLG+  HF+ E              K     +++++    +T+  FR LR HGY VS EV   F+D    F         D + +L+L+ AS+ +  GE +MEEA  F+S++LKE +    ++S S+E D          LE   H  +P LE R ++
Sbjct:   10 SCLHKSLIRSTHHELK--PLRRTIPTLGMCRRGKSFTPSVSMSLTTAVSDDGLQRRIGDYHSNLWDDDFIQSLSTPYGEPSYRERAEKLIGEVKEMFNSMPSEDGESMSPLNDLIERLWMVDSVERLGIDRHFKKEIKSALDYVYSYWNEKGIGCGRDSVFPDVNSTASGFRTLRLHGYSVSSEVLKVFQDQNGQFAFSPSTKERDIRTVLNLYRASFIAFPGEKVMEEAEIFSSRYLKEAVQKIPVSSLSQEIDY--------TLEYGWHTNMPRLETRNYL 282          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.469e-22
Identity = 81/277 (29.24%), Postives = 136/277 (49.10%), Query Frame = 3
Query:   57 TLATSVNGFKCLPLATNRAAIRIMAKNKPVQC-----LVSTKYDNL--TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDV----------TEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD-------YNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDF-------KGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            +L +S N  K L ++T    +R+  + K +        VS + DN    + RR A++ P++W+ DF+QSL+S Y   +Y  RAE +  +VK     +           + L +L ++D+++RLG+  HF+ E            K+        +    +L +T+L  R LR HGY VS +V   FKD+K  F C          + +L+L+ AS  +  GE +MEEA  F++ +LK+++     K     ++ + +  LE   H  +P LEAR +I
Sbjct:   19 SLISSSNVQKALCISTAVPTLRMRRRQKALVINMKLTTVSHRDDNGGGVLQRRIADHHPNLWEDDFIQSLSSPYGGSSYSERAETVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVYSYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVSSDVLEYFKDEKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKKVL----QKIPVSNLSGEIEYVLEYGWHTNLPRLEARNYI 291          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.728e-22
Identity = 83/281 (29.54%), Postives = 136/281 (48.40%), Query Frame = 3
Query:   57 TLATSVNGFKCLPLATNRAAIRIMAKNKPVQC-----LVSTKYDNL--TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDV----------TEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD-------YNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDF-------KGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMM----ITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            +L +S N  K L ++T    +R+  + K +        VS + DN    + RR A++ P++W+ DF+QSL+S Y   +Y  RA  +  +VK     +           + L +L ++D+++RLG+  HF+ E            K+        +    +L +T+L  R LR HGY VS +V   FKD K  F C          + +L+L+ AS  +  GE +MEEA  F++ +LKE++    ++S S+E         +  LE   H  +P LEAR +I
Sbjct:   19 SLISSSNVQKALCISTAVPTLRMRRRQKALVINMKLTTVSHRDDNGGGVLQRRIADHHPNLWEDDFIQSLSSPYGGSSYSERAVTVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVYSYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVSSDVLEYFKDQKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKEVLQKIPVSSFSRE--------IEYVLEYGWHTNLPRLEARNYI 291          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 74/236 (31.36%), Postives = 109/236 (46.19%), Query Frame = 3
Query:  180 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLD-------QLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKE-------------NLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD----------DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMI-TSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            ++ RR+ N+  ++WD D + SLNS Y    Y    ++L  ++K  +    E  D       +L+++D L+ LG+  HFE E              Y W  E             +L AT+L FR LR H Y VS  V   FKD+   F C+            + +LSL  AS  S  GE +MEEA  FT ++L +++    +  + D  +  + K ALE P H  VP  EAR F+
Sbjct:    8 SIPRRTGNHHGNVWDDDLIHSLNSPYGAPAYYELLQKLIQEIKHLLLTEMEMDDGDHDLIKRLQIVDTLECLGIDRHFEHEIQTAALDYV-----YRWWNEKGIGEGSRDSFSKDLNATALGFRALRLHRYNVSSGVLKNFKDENGKFFCNFTGEEGRGDKQVRSMLSLLRASEISFPGEKVMEEAKAFTREYLNQVLAGHGDVTDVDQSLLREVKYALEFPWHCSVPRWEARSFL 238          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 74/237 (31.22%), Postives = 112/237 (47.26%), Query Frame = 3
Query:  195 SANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTA-IKDVTEP--------LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWR---------------KENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDD-------------FKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            ++N   ++W+ D +QSLNS Y    Y+ R+E+L  ++K   + D+ +         + +LE++D ++ LG+  HF+PE             DY +R               K++L AT+L FR LR H Y VS  V   F+DD   F C                + +LSL  AS     GE +MEEA  FT+ +LK+++    +   D  +  + K ALE P H  V   EAR FI
Sbjct:   22 TSNRHGNMWEDDRIQSLNSPYGAPAYQERSEKLIEEIKLLFLSDMDDSCNDSDRDLIKRLEIVDTVECLGIDRHFQPEIKLAL--------DYVYRCWNERGIGEGSRDSLKKDLNATALGFRALRLHRYNVSSGVLENFRDDNGQFFCGSTVEEEGAEAYNKHVRCMLSLSRASNILFPGEKVMEEAKAFTTNYLKKVLAGREATHVDESLLGEVKYALEFPWHCSVQRWEARSFI 250          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 70/209 (33.49%), Postives = 112/209 (53.59%), Query Frame = 3
Query:  189 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTE-PLDQ---LELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            R  AN+ PSIW   FL  +     ++  ++   +LK +V+  +K+  + P+     L+LID +QRLG+ YHFE E             D NW  +    +SL FRL+R+ GY V+ +VF+ +KD    F   + +D +G+L L+EA+   + GE I+E+A  FT   L  M   + S    +F   + +RAL+ PL  ++P +EA  +I
Sbjct:   10 RPIANFPPSIWGDQFL--IYEKQVEQGVEQIVNDLKKEVRQLLKEALDIPMKHANLLKLIDEIQRLGIPYHFEREIDHALQCIYETYGD-NWNGDR---SSLWFRLMRKQGYYVTCDVFNNYKDKNGAFKQSLANDVEGLLELYEATSMRVPGEIILEDALGFTRSRLSIMTKDAFSTNPALFT--EIQRALKQPLWKRLPRIEAAQYI 210          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.486e-20
Identity = 77/235 (32.77%), Postives = 120/235 (51.06%), Query Frame = 3
Query:  150 CLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSN-YTDETYKRRAEELKGKVKTAIKDV-------TEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXX--KDYNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF-------ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMM--ITSNSKEEDVFVAEQAKRALELPLHWKVPMLEAR 785
            CL S    + +V RR  NY  ++WD DF+QSL S  Y    Y+ RA+ L G+VK  + +         + L +L L+D+++RLG+  HF+ E              K     +E+    L +T+L  R LR HGY VS +V + FKD    F       I  + +G+L+L  AS  +  GE +M+EA  F++K+L+E +  I ++S      ++ + +  LE   H  +P LEAR
Sbjct:   47 CLTSVASTD-SVQRRVGNYHSNLWDDDFIQSLISTPYGAPDYRERADRLIGEVKDIMFNFKSLEDGGNDLLQRLLLVDDVERLGIDRHFKKEIKTALDYVNSYWNEKGIGCGRESVVTDLNSTALGLRTLRLHGYTVSSDVLNVFKDKNGQFSSTANIQIEGEIRGVLNLFRASLVAFPGEKVMDEAETFSTKYLREALQKIPASS-----ILSLEIRDVLEYGWHTNLPRLEAR 275          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20
Identity = 64/211 (30.33%), Postives = 106/211 (50.24%), Query Frame = 3
Query:  183 VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTA-IKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKE---NLYATSLEFRLLRQHGYPVSQEVFSGFKDDK---VGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            V+R  A++  +IW+        S+   ET+K +   LK  VK A +     P++ ++ ID L RLG++YHFE +                  ++   +LY   + F++ RQ G+ +S +VF  FKD+     G +  D  G+LSL+EA+ +   GE I++EA  F+  HL+E+     S      +A + K AL+ P H  +  +E R +I
Sbjct:    5 VNRPLADFPANIWEDPLTSFSKSDLGTETFKEKHSTLKEAVKEAFMSSKANPIENIKFIDALCRLGVSYHFEKDIVEQLDKSFDCLDFPQMVRQEGCDLYTVGIIFQVFRQFGFKLSADVFEKFKDENGKFKGHLVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEI-----SSRSSPHLAIRIKNALKHPYHKGISRIETRQYI 210          
The following BLAST results are available for this feature:
BLAST of DN617390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TPSD3_ABIGR4.098e-2329.37Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
DCS3_GOSAR5.352e-2334.76(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
TPSD8_ABIGR2.656e-2227.92Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
TPSDA_ABIGR3.469e-2229.24Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSDB_ABIGR7.728e-2229.54Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSD4_ABIGR2.937e-2131.36Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSD5_ABIGR6.543e-2131.22Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]
AMS1_ARTAN6.543e-2133.49Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
TPSD6_ABIGR2.486e-2032.77Camphene synthase, chloroplastic OS=Abies grandis ... [more]
HUMS_ARATH3.247e-2030.33Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617390 ID=DN617390; Name=DN617390; organism=Citrus sinensis; type=EST; length=797bp
GTAAGCTAGCTTACACTGCATCTGTATATCCAATGTCTTCTTGCATTAAT
CCCTCAACCTTGGCTACCTCTGTAAATGGTTTCAAATGTCTTCCTCTTGC
AACAAATAGAGCAGCCATCAGAATCATGGCAAAAAATAAGCCAGTCCAAT
GCCTTGTCAGCACCAAATATGATAATTTGACAGTTGATAGGAGATCAGCA
AACTACCAACCTTCAATTTGGGACCATGATTTTTTGCAGTCACTGAATAG
CAACTATACGGATGAAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAA
AAGTGAAGACAGCGATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAG
CTGATTGATAATTTGCAAAGACTTGGATTGGCTTATCATTTTGAGCCTGA
GATTCGGAACATATTGCGTAATATCCACAACCATAATAAAGATTATAATT
GGAGAAAAGAAAATCTGTATGCAACCTCCCTTGAATTCAGACTACTTAGA
CAACATGGCTATCCTGTTTCTCAAGAGGTTTTCAGTGGTTTTAAAGACGA
CAAGGTAGGCTTCATTTGTGATGATTTCAAGGGAATACTGAGCTTGCATG
AAGCCTCGTATTACAGCTTAGAAGGAGAAAGCATCATGGAGGAGGCCTGG
CAATTCACCAGTAAGCATCTTAAAGAAATGATGATCACCAGCAACAGCAA
GGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGCGCTGGAGCTCC
CTCTGCATTGGAAAGTGCCTATGTTAGAGGCAAGGTGGTTCATACAC
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