DN617390

Overview
NameDN617390
Unique NameDN617390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12554 contig Csv1_Contig12554:52..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.590e-19
Identity = 71/237 (29.96%), Postives = 116/237 (48.95%), Query Frame = 3
Query:  171 DNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVK-----------TAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRK------ENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKV--GFIC------DDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMM----ITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            D+  V RR   +  ++WD DF+QSL++ Y   +Y+ RA+ L  +VK             I  + + + +L ++DN++RLG+  HF+ E             +            +L +T+L FR+LR HGY VS +V   FK++K    F+C      ++ K +L+L  AS  +  GE +MEEA  F+  +LKE +    ++S S+E         +  LE      +P LE R +I
Sbjct:   59 DDHGVQRRIVEFHSNLWDDDFIQSLSTPYGAPSYRERADRLIVEVKGIFTSISAEDGELITPLNDLIQRLLMVDNVERLGIDRHFKNEIKAALDYVYSYWNEKGIGSGSDSGVADLNSTALGFRILRLHGYSVSSDVLEHFKEEKEKGQFVCSAIQTEEEIKSVLNLFRASLIAFPGEKVMEEAEIFSKIYLKEALQNIAVSSLSRE--------IEYVLEDGWQTNMPRLETRNYI 287          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.412e-15
Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  336 LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMM---ITSNSKEEDVFVAEQAKRALELPLHWKVPMLEAR 785
            L++L ++DN+ RLG+  HFE E             +    W + N    L  T+L FRLLR H Y VS  +F  FKD    FIC       D   +L+L+ AS  +  GE+I++EA  F +K+L+E +    TS++      ++++ K AL+   H  VP +EA+
Sbjct:  299 LERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAK 463          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 59/202 (29.21%), Postives = 94/202 (46.53%), Query Frame = 3
Query:  213 SIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAI-----KDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            S W   FL+   ++   +  +R  E LK KV+  I      D       +  I  L  LGL+YHFE E            +D    +  L+  S  FR+ R +GY +S +VF  FK D   F   + +D KG+LS +EA ++    + I++EA  FT  HL+   + +  +     +++  + AL +P H  +  L AR +I
Sbjct:   21 SQWGDQFLKFSIADSDFDVLEREIEVLKPKVRENIFVSSSTDKDAMKKTILSIHFLDSLGLSYHFEKEIEESLKHAFEKIEDLIADENKLHTISTIFRVFRTYGYYMSSDVFKIFKGDDGKFKESLIEDVKGMLSFYEAVHFGTTTDHILDEALSFTLNHLES--LATGRRASPPHISKLIQNALHIPQHRNIQALVAREYI 220          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  336 LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKENLY----ATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            L++L L+DN++ LG+  HF+ E             +    W +++L      T+L  R LR HGY VS +V + FKD+   F         + + +++L  AS  +   E  M++A +F   +L+E + T  S    +F  ++ +  +E P H  +P LEAR +I
Sbjct:  353 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLF--KEIEYVVEYPWHMSIPRLEARSYI 515          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  351 LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            LI +L  LGLA+HFE E             D    + +L   S+ FR+ R +G+ +   VF  F  D   F   + +D KGILSL+EA++     + I++EA +FTS HLK +++    +     +    +  L LP  W +  + AR +I
Sbjct:   69 LIQSLLSLGLAFHFENEIKDILEDAFRRIDDITGDENDLSTISIMFRVFRTYGHNLPSSVFKRFTGDDGKFERSLTEDAKGILSLYEAAHLGTTTDYILDEALEFTSSHLKSLLVGGMCRPH---ILRLIRNTLYLPQRWNMEAVIAREYI 216          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 46/165 (27.88%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  336 LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKENLY----ATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            L++L L+DN++ LG+  HF+ E             +    W +++L      T+L  R LR HGY VS +V + FKD+   F         + + +++L  AS  +   E  M++A +F   +L++ + T  S    ++  ++ +  +E P H  +P LEAR +I
Sbjct:  353 LERLSLVDNIEHLGIGRHFKQEIKVALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRTHGYDVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDEGAMDDARKFAEPYLRDALATKISTNTKLY--KEIEYVVEYPWHMSIPRLEARSYI 515          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  351 LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            LI  L  LGLA+HFE E             D    +++L   S+ FR+ R +G+ +   VF  F  D   F   + +D KGILSL+EA++     + I++EA +FTS HLK ++     +     +    +  L LP  W +  + AR +I
Sbjct:   69 LIQLLLSLGLAFHFENEIKNILEHAFRKIDDITGDEKDLSTISIMFRVFRTYGHNLPSSVFKRFTGDDGKFQQSLTEDAKGILSLYEAAHLGTTTDYILDEALKFTSSHLKSLLAGGTCRPH---ILRLIRNTLYLPQRWNMEAVIAREYI 216          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 46/165 (27.88%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  336 LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKENLY----ATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            L++L L+DN++ LG+  HF+ E             +    W +++L      T+L  R LR HGY VS +V + FKD+   F         + + ++ L  AS  +   E  M++A +F   +L++ + T  S    +F  ++ +  +E P H  +P  EAR +I
Sbjct:  353 LERLSLVDNIEHLGIGRHFKQEIKVALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRTHGYDVSSDVLNNFKDENGRFFSSAGQTHVELRSVVILFRASDLAFPDEGAMDDARKFAEPYLRDALATKISTNTKLF--KEIEYVVEYPWHMSIPRSEARSYI 515          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-12
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  333 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFI 794
            PLD  E    +D ++RLG+  HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ S  GE+IMEEA   T ++L+  +   ++ ++  F   +  + + AL+ P H  +P LEAR +I
Sbjct:  350 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYI 521          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 51/174 (29.31%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  333 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFI 794
            PLD  E    +D ++RLG+ +HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ +  GE+IMEEA   T ++L+  +    + ++      +  + + AL+ P H  +P LEAR +I
Sbjct:  331 PLDLFERLWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKLCTERYLRNALEDGGASDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYI 502          
The following BLAST results are available for this feature:
BLAST of DN617390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TPSD9_ABIGR3.590e-1929.96Terpinolene synthase, chloroplastic OS=Abies grand... [more]
TPSD1_ABIGR1.412e-1533.94Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
BARS_ARATH9.151e-1529.21Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
TASY_TAXBR5.931e-1429.09Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
GBIS2_ARATH7.746e-1431.79(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]
TASY_TAXBA2.254e-1327.88Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
GBIS1_ARATH3.845e-1331.79(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]
TASY_TAXCH1.119e-1227.88Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TPSDV_ABIGR2.492e-1230.46Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TPSD1_PINTA4.251e-1229.31Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617390 ID=DN617390; Name=DN617390; organism=Citrus sinensis; type=EST; length=797bp
GTAAGCTAGCTTACACTGCATCTGTATATCCAATGTCTTCTTGCATTAAT
CCCTCAACCTTGGCTACCTCTGTAAATGGTTTCAAATGTCTTCCTCTTGC
AACAAATAGAGCAGCCATCAGAATCATGGCAAAAAATAAGCCAGTCCAAT
GCCTTGTCAGCACCAAATATGATAATTTGACAGTTGATAGGAGATCAGCA
AACTACCAACCTTCAATTTGGGACCATGATTTTTTGCAGTCACTGAATAG
CAACTATACGGATGAAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAA
AAGTGAAGACAGCGATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAG
CTGATTGATAATTTGCAAAGACTTGGATTGGCTTATCATTTTGAGCCTGA
GATTCGGAACATATTGCGTAATATCCACAACCATAATAAAGATTATAATT
GGAGAAAAGAAAATCTGTATGCAACCTCCCTTGAATTCAGACTACTTAGA
CAACATGGCTATCCTGTTTCTCAAGAGGTTTTCAGTGGTTTTAAAGACGA
CAAGGTAGGCTTCATTTGTGATGATTTCAAGGGAATACTGAGCTTGCATG
AAGCCTCGTATTACAGCTTAGAAGGAGAAAGCATCATGGAGGAGGCCTGG
CAATTCACCAGTAAGCATCTTAAAGAAATGATGATCACCAGCAACAGCAA
GGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGCGCTGGAGCTCC
CTCTGCATTGGAAAGTGCCTATGTTAGAGGCAAGGTGGTTCATACAC
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