DN617390

Overview
NameDN617390
Unique NameDN617390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12554 contig Csv1_Contig12554:52..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 55/194 (28.35%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  225 HDFLQSLNSNYTDETYKRRAEELK-GKVKTAIK-DVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 791
            H  + + +  + ++T    + EL   K+K  +  +V  P + LE+ID +Q LG   HF                 +N    +L+  +L FRLLRQ G+ V + +F    D K GF   + +D KG+  L EAS   +EGE  ++ A +FT   L E+     S ++     ++  ++L  P H  V  L ++ F
Sbjct:   52 HASVSNPSKQFHNKTSLEYSHELNIKKIKNILSANVDVPSENLEMIDVIQSLGTDLHFRQGIEQTLHMIYKEGLQFNG---DLHEIALRFRLLRQEGHYVQESIFKNILDKKGGFKDVVKNDVKGLTELFEASELRVEGEETLDGAREFTYSRLNELCSGRESHQK-----QEIMKSLAQPRHKTVRGLTSKRF 237          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  333 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXX---KDYNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAE---QAKRALELPLHWKVPMLEARWFI 794
            PLD  E    +D ++RLG+  +F+ E               +   W + N    +  T++  R+LR HGY VS +V   F+D+K  F C  F G         L+L+  S     GE IMEEA  FT+ HL+  +  +N+ ++     +   + + A++ P H  +P LEAR +I
Sbjct:  352 PLDLFERLWAVDTVERLGIDRYFKKEIKESLDYVYRYWDAERGVGWARCNPIPDVDDTAMGLRILRLHGYNVSSDVLENFRDEKGDFFC--FAGQTQIGVTDNLNLYRCSQVCFPGEKIMEEAKTFTTNHLQNALAKNNAFDKWAVKKDLPGEVEYAIKYPWHRSMPRLEARSYI 524          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 60/215 (27.91%), Postives = 102/215 (47.44%), Query Frame = 3
Query:  204 YQPSIWDHDFLQSLNSNYTDETYKRRA-EELKGKVKTAIKDVTEPLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYN--WRK----ENLYATSLEFRLLRQHGYPVSQEVFSGFKDDK-----VGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAE---QAKRALELPLHWKVPMLEARWFI 794
            + PS     F+Q+ +SN  +  Y R A +   G V         P+D  E   ++D LQRLG++ +FE E             D    W +    +++  T++ FRLLRQHGY VS +VF  F+ +      VG       G+ +L+ AS  +   E I++ A +F+  +L E        ++ + + +   +   ALE+P +  +P +E R++I
Sbjct:  288 FSPSSTAFAFMQTRDSNCLE--YLRNAVKRFNGGVPNVF-----PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYI 495          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  333 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFI 794
            PLD  E    +D ++RLG+  HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ +  GE+IMEEA   T ++L+  +    + ++      +  + + AL+ P H  +P LEAR +I
Sbjct:  340 PLDLFERLWAVDTIERLGIDRHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKTCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYI 511          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  333 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFI 794
            PLD  E    +D ++RLG+ +HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ +  GE+IM+EA   T ++L+  +    + ++      +  + + AL+ P H  +P LEAR +I
Sbjct:  348 PLDLFERLWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPIPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVAFPGETIMQEAKLCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYI 519          
The following BLAST results are available for this feature:
BLAST of DN617390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
LINS_ARATH7.250e-1228.35Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
TPSD1_GINBI9.469e-1230.29Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
KSA_ARATH2.110e-1127.91Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
TPSD1_PICAB2.755e-1129.31Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TPSD2_PICAB3.598e-1128.74Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617390 ID=DN617390; Name=DN617390; organism=Citrus sinensis; type=EST; length=797bp
GTAAGCTAGCTTACACTGCATCTGTATATCCAATGTCTTCTTGCATTAAT
CCCTCAACCTTGGCTACCTCTGTAAATGGTTTCAAATGTCTTCCTCTTGC
AACAAATAGAGCAGCCATCAGAATCATGGCAAAAAATAAGCCAGTCCAAT
GCCTTGTCAGCACCAAATATGATAATTTGACAGTTGATAGGAGATCAGCA
AACTACCAACCTTCAATTTGGGACCATGATTTTTTGCAGTCACTGAATAG
CAACTATACGGATGAAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAA
AAGTGAAGACAGCGATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAG
CTGATTGATAATTTGCAAAGACTTGGATTGGCTTATCATTTTGAGCCTGA
GATTCGGAACATATTGCGTAATATCCACAACCATAATAAAGATTATAATT
GGAGAAAAGAAAATCTGTATGCAACCTCCCTTGAATTCAGACTACTTAGA
CAACATGGCTATCCTGTTTCTCAAGAGGTTTTCAGTGGTTTTAAAGACGA
CAAGGTAGGCTTCATTTGTGATGATTTCAAGGGAATACTGAGCTTGCATG
AAGCCTCGTATTACAGCTTAGAAGGAGAAAGCATCATGGAGGAGGCCTGG
CAATTCACCAGTAAGCATCTTAAAGAAATGATGATCACCAGCAACAGCAA
GGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGCGCTGGAGCTCC
CTCTGCATTGGAAAGTGCCTATGTTAGAGGCAAGGTGGTTCATACAC
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