DN617388

Overview
NameDN617388
Unique NameDN617388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  122 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 469
            E  L+W + KRRRA   F GA  I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SPCLKKN+AMGYV S   + GT + +EVR K     ++KMPFV T YY
Sbjct:  285 EGSLSWTLGKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYY 400          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.409e-22
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  122 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 469
            E  L+W + KRRRA   F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT + +EVR K     ++KMPFVPT YY
Sbjct:  285 EGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYY 400          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.814e-22
Identity = 54/116 (46.55%), Postives = 67/116 (57.76%), Query Frame = -3
Query:  122 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 469
            E  L+W + KRRRA   F GA  I+ QL      RRVG    G P R+ S +   +G  IG +TSG  SPCLKKN+AMGYV     + GT + +EVR K     ++KMPFV T YY
Sbjct:  279 EGSLSWTLGKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCPSPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  122 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 469
            E  L+W + KRRR    F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT++ +EVR K     ++KMPFVPT YY
Sbjct:  285 EGSLSWTLGKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCPSPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYY 400          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.884e-15
Identity = 53/126 (42.06%), Postives = 67/126 (53.17%), Query Frame = -3
Query:  119 EAGLTWAIEKRRR----AEGGFLGAEKILKQLDEGPPVR-RVGF--FAGGPPARSHSKVH-DEQGNPIGEITSGGFSPCLKK-NIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 469
            EA L W I K RR     +  F G  KI+ QL+     + RVGF     GP AR+  K+   +    +G +TSG  SP L   NI   YV+ G HK GTK+ ++VR K Y   + KMP VPT YYK
Sbjct:  274 EAALNWVISKSRRDLVDQKYWFNGYAKIMDQLNNKTYSKVRVGFKYLKKGPAARNGVKIFLPDAETEVGLVTSGSASPTLNNINIGQAYVQKGYHKKGTKLLVQVRNKFYPIELAKMPLVPTHYYK 399          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_PROMM (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L++ IA+GY+ + L + G +V++E+RGK +   + K PF    Y +PS
Sbjct:  260 EAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLEEAIALGYLPTALARIGNEVEVEIRGKHHRATVVKRPF----YRRPS 372          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L + IA+GY+ + L + G +V +E+RGK +   + K PF    Y +PS
Sbjct:  260 EAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLGEAIALGYLPTALARIGNEVAVEIRGKHHPATVVKRPF----YRRPS 372          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_LEPIN (Aminomethyltransferase OS=Leptospira interrogans GN=gcvT PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = -3
Query:  134 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 469
            E+G+ W ++++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  256 ESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_LEPIC (Aminomethyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvT PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = -3
Query:  134 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 469
            E+G+ W ++++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  256 ESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.176e-12
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            EAGL W +     A+  F+G + + +  + GP  R VG    G     H       G P+G +TSG +SP L++ IA+  + + L K GT + +E+RGKA    + + PF
Sbjct:  254 EAGLGWLVHLEMPAD--FIGRQALERAAETGPNKRLVGLKLEGRAIARHDYPVLHNGEPVGVVTSGTWSPTLEEPIALASIPTALAKLGTNLSVEIRGKAQPATVVRRPF 361          
The following BLAST results are available for this feature:
BLAST of DN617388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GCST_CANFA8.970e-2348.28Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_HUMAN3.409e-2247.41Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]
GCST_BOVIN5.814e-2246.55Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]
GCST_MOUSE1.692e-2146.55Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_YEAST6.884e-1542.06Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_PROMM9.941e-1436.13Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PROM32.892e-1336.13Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_LEPIN2.892e-1339.13Aminomethyltransferase OS=Leptospira interrogans G... [more]
GCST_LEPIC2.892e-1339.13Aminomethyltransferase OS=Leptospira interrogans s... [more]
GCST_SYNS94.176e-1233.64Aminomethyltransferase OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617388 ID=DN617388; Name=DN617388; organism=Citrus sinensis; type=EST; length=471bp
TAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTCAATGTTTAT
GAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGCAGAACCAAC
AAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAAATGGCATTT
TAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATCTTAACTTTT
GTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGCTATATTCTT
CTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAATGGGATTCC
CTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGACCTCCAGCG
AAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTGTTTGAGTAT
TTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCTTTTCTATGG
CCCATGTCAGTCCAGCTTCTA
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