DN617388

Overview
NameDN617388
Unique NameDN617388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1112..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_HALOH (Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.176e-12
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = -3
Query:  137 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 469
            EAGL W ++  + +   F+G   +LK  +EG   + VGF   G     H     + G+ IG +TSG  SP L + I MGYV+      G  + I VR +A  G + K+PF+
Sbjct:  250 EAGLGWTVKFDKAS---FIGKRALLKYKEEGLSRKLVGFKLKGRGIPRHGYPIKDNGDQIGVVTSGSMSPTLSEGIGMGYVRYDKATPGESITIVVRNRAITGEVVKLPFI 357          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_GEOKA (Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            EAGL +A++  +  E  F+G   + +Q +EGPP R VG          H  +    G  +G +T+G  SP LKKNI +  VK+ +   G +V++++RGK    NI  +PF
Sbjct:  252 EAGLGFAVKTEK--ETPFIGQAVLKRQKEEGPPRRLVGIEMIDRGIPRHGYLVFADGEEVGFVTTGTQSPTLKKNIGLALVKADVAAIGREVEVDIRGKRLKANIVPIPF 359          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_SYNPX (Aminomethyltransferase OS=Synechococcus sp. (strain WH8102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            EAGL W +      +  F+G + + +  + GP  R VG    G     H       G  +G +TSG +SP L++ IA+ YV + L K G ++ +E+RGKA    + K PF
Sbjct:  256 EAGLGWLVHLEMPVD--FVGRQALEQAAESGPTKRLVGLKLQGRAIARHDYPVLHNGETVGVVTSGTWSPTLEEPIALAYVPTALAKLGAELSVEIRGKAQPACVVKRPF 363          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_BACA2 (Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            EAG+ +A++ ++ ++  F G   + +Q ++G P + VG          H     + G PIGE+T+G  SP LKKNI +  +K+   + GT+V++E+R K     I + PF
Sbjct:  252 EAGIGFAVKHKKDSD--FFGKSVLREQKEKGAPRKLVGLEMIEKGIPRHGYAVKKDGVPIGEVTTGTQSPTLKKNIGLALIKTEFSEVGTEVEVEIRKKTVKAKIVRTPF 359          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.707e-11
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            E G+ WA+    + E  F+G E + +QL+EG   R  GF         H     + G  IG +TSG FSP L + I M  ++ G +K+G  ++IE+R K     I KMPF
Sbjct:  248 EVGIKWAV----KFEKDFMGKEALKRQLEEGTSRRLKGFKIIDKGIARHGYKVFKDGKEIGYVTSGTFSPTLNQAIGMALIEKG-YKSGEIIEIEIRNKLVKAEIVKMPF 352          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_LEPBL (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  134 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 469
            E+G+ W +++++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  256 ESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_LEPBJ (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  134 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 469
            E+G+ W +++++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  256 ESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_PORGI (Aminomethyltransferase OS=Porphyromonas gingivalis GN=gcvT PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  251 EAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_PORG3 (Aminomethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvT PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  140 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 469
            EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  251 EAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360          
The following BLAST results are available for this feature:
BLAST of DN617388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GCST_HALOH4.176e-1235.14Aminomethyltransferase OS=Halothermothrix orenii (... [more]
GCST_GEOKA1.215e-1135.45Aminomethyltransferase OS=Geobacillus kaustophilus... [more]
GCST_SYNPX2.073e-1133.64Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_BACA22.073e-1132.73Aminomethyltransferase OS=Bacillus amyloliquefacie... [more]
GCST_THEM42.707e-1136.36Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_LEPBL3.536e-1135.65Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_LEPBJ3.536e-1135.65Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_PORGI6.031e-1138.05Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_PORG36.031e-1138.05Aminomethyltransferase OS=Porphyromonas gingivalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617388 ID=DN617388; Name=DN617388; organism=Citrus sinensis; type=EST; length=471bp
TAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTCAATGTTTAT
GAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGCAGAACCAAC
AAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAAATGGCATTT
TAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATCTTAACTTTT
GTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGCTATATTCTT
CTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAATGGGATTCC
CTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGACCTCCAGCG
AAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTGTTTGAGTAT
TTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCTTTTCTATGG
CCCATGTCAGTCCAGCTTCTA
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