DN617387

Overview
NameDN617387
Unique NameDN617387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:454..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = -2
Query:  221 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSA------EDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 580
            SKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +L +   V +  +          ++  Y    AQ QG   +  LEC PTLQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  122 SKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.848e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  221 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 580
            +KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E    +     P+ +         +  GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:  121 TKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = -2
Query:  287 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 577
            KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  124 KELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = -2
Query:  287 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 577
            KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  124 KELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of DN617387 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = -2
Query:  224 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 577
            KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +L    + ++     + +D         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:  123 KELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
The following BLAST results are available for this feature:
BLAST of DN617387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SEP1_ARATH8.385e-1841.98Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
CMB1_DIACA7.848e-1640.32MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ4.761e-1342.27MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI4.761e-1342.27MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD17_ORYSJ3.086e-1235.61MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617387 ID=DN617387; Name=DN617387; organism=Citrus sinensis; type=EST; length=581bp
AAGCGCGGTGATTGAAAATACACGCACACACAACATAGCTATATATCGTC
ATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCC
TTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATA
CAAAGTTGCTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGC
CCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACT
CGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTT
GCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGT
TGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTG
AAGTGTGTTCACTTGGTATCCCTCCATCAACCTTTGTTTGAGGGTCTTAT
TTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCC
AGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAG
CTGCCTTTCAAGTGACTCAAGCTCTTTGCTG
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