DN617385

Overview
NameDN617385
Unique NameDN617385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617385_ssr155 microsatellite DN617385_ssr155:155..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9083 contig Csv1_Contig9083:160..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH1_CAEEL (Probable V-type proton ATPase subunit H 1 OS=Caenorhabditis elegans GN=vha-18 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP HK  +FW +N     +N  ++L++L+ +L+ S+DP  L VA  D+ +F++Y+P G++ V  L  KE +M+L+  ++  V   ALL  Q+L +
Sbjct:  347 SPAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKSNDPLVLCVAAHDIGEFVRYYPRGKLKVEQLGGKEAMMRLLTVKDPNVRYHALLAAQKLMI 441          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH1_CAEBR (Probable V-type proton ATPase subunit H 1 OS=Caenorhabditis briggsae GN=vha-18 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP HK  +FW +N     +N  ++L++L+T+L+ S+DP  L VA  D+ +F++Y+P G++ V  L  KE +M+L+   +  V   ALL  Q+L +
Sbjct:  347 SPPHKCEIFWTENAHKLNDNRQELLKMLITMLEKSNDPLVLCVAANDIGEFVRYYPRGKMHVEQLGGKEALMRLLTVPDPNVRYFALLAAQKLMV 441          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_DICDI (V-type proton ATPase subunit H OS=Dictyostelium discoideum GN=vatH PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            +P+HK   FW++NI+ FEEN++Q+++ L  IL TS S P  L++AC DL +F+++H  G+ I+T +  + R        N EV   AL  +Q++ L
Sbjct:  342 TPVHKSERFWKENISKFEENNYQVIKHLHQILKTSQSTPLQLSIACHDLCEFVRHHSRGKAIMT-ITNQTRYHGYDVKSNEEVKNQALFALQKMML 436          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_SCHPO (V-type proton ATPase subunit H OS=Schizosaccharomyces pombe GN=vma13 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  287 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 565
            SP H+   FW  N     E+++ +L+ L  I+  + D  +LAVAC DL  +I+ +P GR ++    AK+R+M LM+H + EV   AL  +Q L
Sbjct:  346 SPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNEDNTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLL 438          
The following BLAST results are available for this feature:
BLAST of DN617385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATH1_CAEEL1.563e-1335.79Probable V-type proton ATPase subunit H 1 OS=Caeno... [more]
VATH1_CAEBR2.041e-1336.84Probable V-type proton ATPase subunit H 1 OS=Caeno... [more]
VATH_DICDI7.757e-1338.54V-type proton ATPase subunit H OS=Dictyostelium di... [more]
VATH_SCHPO1.323e-1237.63V-type proton ATPase subunit H OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617385 ID=DN617385; Name=DN617385; organism=Citrus sinensis; type=EST; length=567bp
ATCAAAAGGTCAATATCAGATGGTATCAATTTATTCCTCATCTCAAAAAC
AAAATAAATTTCCCAAATATGGTAAAAAATCAACTAATTCTTCACGGTAC
TTAAAAAAATCCAACAGACGAGTTCCCCTGATTCATAAATTCCTCCAATG
ATTGATAAATAAATAAACAACCTAACCAGCCAAACTGGAATCAAATCATT
ACAAGCATTTCCTTTGTAAACAATACTGGACCCCATAGAAAGAGAATTCA
GGCCTGCAAAAAGCTCGCGTACTTTGCGCCTAGGAAAAGCCTTTGGATGC
AGAGTAAGGCGCTCTTGGTAACCTCGGTATTCTCATGGTTCATCAATTTC
ATCACCCGTTCCTTAGCTTTGAGGTCCGTCACAATGACCCGCCCAGCTGG
ATGGTACTGGATAAATTGTGACAGATCAAAGCAAGCGACAGCAAGAGCTC
GTGGATCACTGGATGTATCCAAAATTGTTAAGAGGACCCTTAGAATCTGG
AAATCATTTTCTTCAAAGTTTGTGATATTATCACGCCAGAATAGGGGATC
TTTGTGCATAGGGGACC
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