DN617384

Overview
NameDN617384
Unique NameDN617384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7802 contig Csv1_Contig7802:26..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STI1L_PLAFA (STI1-like protein (Fragment) OS=Plasmodium falciparum PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A   K  GN  F  G YE AV++F++AI+  P +HVLYSN S A ASL  + +AL  A K + +K DW KGY R G A  GL+    A  +Y +GL IDPNN+
Sbjct:    7 AQRLKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNK 109          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STI1L_PLAF7 (STI1-like protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0324 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A   K  GN  F  G YE AV++F++AI+  P +HVLYSN S A ASL  + +AL  A K + +K DW KGY R G A  GL+    A  +Y +GL IDPNN+
Sbjct:    7 AQRLKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNK 109          

HSP 2 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            D A+E K KGN  F + D+  A + + EAI  +P++  LYSNR+AA   L  Y  AL D  K +EL P + K YSR G  H  ++DY +A+ +Y KGL++DPNN+
Sbjct:  376 DKAEEHKNKGNEYFKNNDFPNAKKEYDEAIRRNPNDAKLYSNRAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDPNNK 480          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            AD+ K +GN      +Y AAV  +T+AI L P+N V Y NR+AA + L +Y DA+ D +K + +   +SK Y R+G A   L  + EAV SY+K LD+DP N+
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPEND 187          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            AD+ K +GN      +Y AAV  +T+AI L P+N V Y NR+AA + L +Y DA+ D +K + +   +SK Y R+G A   +  + EAV SY+K LD+DP N+
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEND 187          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            AD+ K +GN      +Y AAV  +T+AI L P+N V Y NR+AA + L +Y DA+ D +K + +   +SK Y R+G A   +  + EAV SY+K LD+DP N+
Sbjct:   85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEND 187          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGT2_YEAST (Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Saccharomyces cerevisiae GN=SGT2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.917e-18
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            A++ K +GN A ++ DYE A+  +TEAI + P N + Y+NR+AAH+SL  Y  A+ DA+  + + P + +GYSRLG A        EA+ +YKK LDI+ +N
Sbjct:  102 AEDLKMQGNKAMANKDYELAINKYTEAIKVLPTNAIYYANRAAAHSSLKEYDQAVKDAESAISIDPSYFRGYSRLGFAKYAQGKPEEALEAYKKVLDIEGDN 203          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGTA_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens GN=SGTA PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A+  K +GN      ++EAAV  + +AI L+P N V + NR+AA++ L NYA A+ D ++ + + P +SK Y R+G A   L  ++EAV  YKK L++DP+NE
Sbjct:   91 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 193          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGT2_SCHPO (Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Schizosaccharomyces pombe GN=sgt2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A++ K +GN A ++ DY+ A+  +T+AI + P + V YSNR+AA+  L  + +A+ DA   + L P  ++ + RLG A L L D   A ++YKKGLD DPNNE
Sbjct:   83 AEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNE 185          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGTA_BOVIN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.212e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A+  K +GN      ++EAAV  + +AI L+P N V + NR+AA++ L NYA A+ D ++ + + P +SK Y R+G A   L  + EAV  Y+K L++DP+NE
Sbjct:   91 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNE 193          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SGTA_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.601e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A+  K +GN      ++EAAV  + +AI L+P N V + NR+AA++ L NY  A+ D ++ + + P +SK Y R+G A   L  + EAV  YKK L++DP+N+
Sbjct:   91 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDND 193          
The following BLAST results are available for this feature:
BLAST of DN617384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
STI1L_PLAFA4.070e-2047.57STI1-like protein (Fragment) OS=Plasmodium falcipa... [more]
STI1L_PLAF74.070e-2047.57STI1-like protein OS=Plasmodium falciparum (isolat... [more]
SGTB_HUMAN1.309e-1843.69Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_RAT1.710e-1842.72Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE1.710e-1842.72Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGT2_YEAST2.917e-1843.14Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_HUMAN1.108e-1741.75Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGT2_SCHPO1.448e-1742.72Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_BOVIN4.212e-1740.78Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_RAT1.601e-1639.81Small glutamine-rich tetratricopeptide repeat-cont... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617384 ID=DN617384; Name=DN617384; organism=Citrus sinensis; type=EST; length=585bp
CTCCCACTCTTCTTTTATATTTGAAACTAATCGTTTTCTTAGCTACAAAG
GAGAAGTTCAAAGGGCAGTACTTTACTCTAAATATTACTGCAACCACAAC
CACAAGCCAATCATTCTTCAATTAATTCCTTGCTGACATGGCAGACGAAG
CCAAAGCGAAAGGAAACGCTGCGTTTTCGTCCGGGGATTACGAAGCCGCG
GTGCGCCACTTCACGGAGGCCATCTCTTTATCTCCGGATAATCACGTGCT
GTATTCCAATCGATCCGCCGCGCACGCTTCTCTCCACAACTACGCCGACG
CCTTAGCCGACGCCAAGAAGACCGTCGAGCTTAAGCCGGACTGGTCCAAA
GGCTACAGCCGACTTGGCGCTGCTCACCTCGGATTACAGGACTATATCGA
AGCTGTTAACTCCTACAAGAAAGGACTTGATATCGATCCTAACAATGAAG
CCCTCAAATCCGGCTTGGCCGATGCTAAAGCGGCGGCCTCCGCGTCGTTC
AGATCTCGTTCCCCGCCGGCCGATAATCCATTTGGTTCTGCTTTTGCCGG
ACCTGAGATGTGGGCAAAATTAACGGCGGATCCGA
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