DN617384

Overview
NameDN617384
Unique NameDN617384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7802 contig Csv1_Contig7802:26..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.294e-13
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A+E K + N  F + DYE A++ +++AI L+P N + Y NRS A+     Y  AL DA + +EL   + KGY R  A+++ L  +  A+  Y+  + + P+++
Sbjct:   28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 130          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  153 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            K KGN  F  G Y+ A+  +T+ +   P N VL +NR++A+  L  +A A +D    V L   ++K YSR GAA   LQ   EA   Y++ L+++PNN
Sbjct:  137 KEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNN 234          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  144 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD----NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  K +GN  F S +Y+AA   FTEA+S+ P     N  LYSNR+AA   L+  ++A+ D    V + P++ K Y R     +  ++Y +AV  Y+K   +DP N
Sbjct:  236 ESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPEN 340          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: DNJC7_MOUSE (DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.074e-12
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            A+  K +GNA ++  DY  A  ++T+AI + P+N   Y NR+A    L  + +AL DA+++V L   + +G+ R G  HL L + + A  S+++ L++D  N
Sbjct:   28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKN 129          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SPAG1_RAT (Sperm-associated antigen 1 OS=Rattus norvegicus GN=Spag1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  138 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            +A+  K KGN AF SGDYE AV ++T ++S  P     Y+NR+ A   L  ++ AL D +K +EL+P   K   R    +     ++EAV+  +K L  +P+N+
Sbjct:  212 LANREKGKGNEAFYSGDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDND 314          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SPAG1_HUMAN (Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  138 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            +A   K KGN AF+SGDYE AV ++T +IS  P   V Y+NR+ A   L N+  A  D +K +EL+P   K   R    +       EA     K LD++P+N+
Sbjct:  208 LATREKEKGNEAFNSGDYEEAVMYYTRSISALP-TVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDND 310          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: RPAP3_XENLA (RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  153 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            K KGN  F SG Y+ A+  +T  +   P N +L +NR++A   L  +A A +D    + L  D++K Y+R GAA L L++   A   Y+K L++D NN
Sbjct:  136 KEKGNNYFKSGKYDEAIECYTRGMDADPYNAILPTNRASAFFRLKKFAVAESDCNLAIALNRDYAKAYARRGAARLALKNLQGAKEDYEKVLELDANN 233          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: DNJC7_HUMAN (DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            A+  K +GNA ++  DY  A  ++T+AI + P N   Y NR+A    L  + +AL DA+++V L   + +G+ R G  HL L + + A  S+++ L++D  N
Sbjct:   28 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKN 129          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: PPT1_SCHPO (Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe GN=ppt1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  132 ADMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            A  A E K + N     G    A+  +T+AI L   N +LYSNRS AH    +Y  A+ DA K +E  P+++K Y R   AH+ +    EAV  ++K L + P++
Sbjct:    2 AKEALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSD 106          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            + A EAK K   A S G+++ A+ H T AI+L+P + ++Y NR++ +  L     A+ DA   +E+ PD +KGY   G A   L ++ EA         ID + E
Sbjct:  121 EAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEE 225          
The following BLAST results are available for this feature:
BLAST of DN617384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PPP5_HUMAN6.294e-1333.98Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
RPAP3_HUMAN8.220e-1338.78RNA polymerase II-associated protein 3 OS=Homo sap... [more]
DNJC7_DICDI8.220e-1336.19DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
DNJC7_MOUSE1.074e-1234.31DnaJ homolog subfamily C member 7 OS=Mus musculus ... [more]
SPAG1_RAT1.402e-1236.54Sperm-associated antigen 1 OS=Rattus norvegicus GN... [more]
SPAG1_HUMAN2.392e-1238.46Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG... [more]
RPAP3_XENLA2.392e-1237.76RNA polymerase II-associated protein 3 OS=Xenopus ... [more]
DNJC7_HUMAN2.392e-1234.31DnaJ homolog subfamily C member 7 OS=Homo sapiens ... [more]
PPT1_SCHPO3.124e-1236.19Serine/threonine-protein phosphatase T OS=Schizosa... [more]
F10AL_ARATH3.124e-1234.29FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617384 ID=DN617384; Name=DN617384; organism=Citrus sinensis; type=EST; length=585bp
CTCCCACTCTTCTTTTATATTTGAAACTAATCGTTTTCTTAGCTACAAAG
GAGAAGTTCAAAGGGCAGTACTTTACTCTAAATATTACTGCAACCACAAC
CACAAGCCAATCATTCTTCAATTAATTCCTTGCTGACATGGCAGACGAAG
CCAAAGCGAAAGGAAACGCTGCGTTTTCGTCCGGGGATTACGAAGCCGCG
GTGCGCCACTTCACGGAGGCCATCTCTTTATCTCCGGATAATCACGTGCT
GTATTCCAATCGATCCGCCGCGCACGCTTCTCTCCACAACTACGCCGACG
CCTTAGCCGACGCCAAGAAGACCGTCGAGCTTAAGCCGGACTGGTCCAAA
GGCTACAGCCGACTTGGCGCTGCTCACCTCGGATTACAGGACTATATCGA
AGCTGTTAACTCCTACAAGAAAGGACTTGATATCGATCCTAACAATGAAG
CCCTCAAATCCGGCTTGGCCGATGCTAAAGCGGCGGCCTCCGCGTCGTTC
AGATCTCGTTCCCCGCCGGCCGATAATCCATTTGGTTCTGCTTTTGCCGG
ACCTGAGATGTGGGCAAAATTAACGGCGGATCCGA
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