DN617380

Overview
NameDN617380
Unique NameDN617380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617380_ssr192 microsatellite DN617380_ssr192:192..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:14..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: LGMN_RAT (Legumain OS=Rattus norvegicus GN=Lgmn PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.440e-38
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  168 GGGGAKVN-DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTG 509
            G G   +  DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA NEENP PGV+IN P+G DVYKGVPKDYTGEDVT ENF AV+ G++ A+ G
Sbjct:   14 GAGAVHIGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANNEENPTPGVVINRPNGTDVYKGVPKDYTGEDVTPENFLAVLRGDEEAVKG 128          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: LGMN_MACFA (Legumain OS=Macaca fascicularis GN=LGMN PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.079e-37
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  171 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTG 509
            G GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G
Sbjct:   14 GIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKG 126          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: LGMN_HUMAN (Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.079e-37
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  171 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTG 509
            G GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G
Sbjct:   14 GIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKG 126          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: LGMN_PONAB (Legumain OS=Pongo abelii GN=LGMN PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.546e-37
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 3
Query:  177 GAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTG 509
            GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G
Sbjct:   16 GAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKG 126          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: LGMN_MOUSE (Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  168 GGGGAKVN-DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTG 509
            G G   V  DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA +EENP PGV+IN P+G DVYKGV KDYTGEDVT ENF AV+ G+  A+ G
Sbjct:   14 GAGAVPVGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVTPENFLAVLRGDAEAVKG 128          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: LGMN_BOVIN (Legumain OS=Bos taurus GN=LGMN PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  171 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTG 509
            G GA   +D +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA +E+NP PG++IN P+G DVY+GV KDYTGEDVT +NF AV+ G+  A+ G
Sbjct:   14 GTGAVPLEDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPKNFLAVLRGDAEAVKG 126          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: HGLB_SCHJA (Hemoglobinase OS=Schistosoma japonicum GN=HAEM PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.804e-26
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  216 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTA 500
            +WAVL+AGSNGF NYRHQAD+CHAY +L   G+K E+II FMYDDIA N+ENP PG I N     D YKGV  DY G+ V  + F  V+ G+K A
Sbjct:   31 KWAVLVAGSNGFENYRHQADVCHAYHVLLSKGVKPEHIITFMYDDIAHNKENPFPGKIFNDYRHKDYYKGVVIDYKGKKVNPKTFLQVLKGDKRA 125          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: HGLB_SCHMA (Hemoglobinase OS=Schistosoma mansoni PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  183 KVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTA 500
            +V+D+  S   +WAVL+AGSNG+ NYRHQAD+CHAY +LR  G+K E+II  MYDDIA+N  NP PG + N  +  D Y+GV  DY G++V  + F  V+ G+K+A
Sbjct:   26 EVSDETVSDNNKWAVLVAGSNGYPNYRHQADVCHAYHVLRSKGIKPEHIITMMYDDIAYNLMNPFPGKLFNDYNHKDWYEGVVIDYRGKNVNSKTFLKVLKGDKSA 131          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_CAEEL (Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  165 NGGGGAKVNDDDDSVG--TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY-KGVPKDYTGEDVTVENFFAVVLG 488
            N G   K+++  D+ G    WAVL+  S  ++NYRH +++   Y  +++ G+ D NII+ + +D+  N  NPRPG +     G ++Y   V  DY GE+VTVE+F  V+ G
Sbjct:   19 NTGLQLKIDELFDTPGHTNNWAVLVCTSKFWFNYRHVSNVLALYHSIKRLGIPDSNIIMMLAEDVPCNSRNPRPGTVYAARAGTNLYGSDVEVDYRGEEVTVESFIRVLTG 129          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_DROME (Putative GPI-anchor transamidase OS=Drosophila melanogaster GN=CG4406 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  219 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLG 488
            WAVL+  S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  NPRPG + N+       +GDD    V  DY G +VTVENF  ++ G
Sbjct:   47 WAVLVDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRPGQVYNNANQHINVYGDD----VEVDYRGYEVTVENFVRLLTG 138          
The following BLAST results are available for this feature:
BLAST of DN617380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LGMN_RAT1.440e-3862.61Legumain OS=Rattus norvegicus GN=Lgmn PE=2 SV=1[more]
LGMN_MACFA2.079e-3759.29Legumain OS=Macaca fascicularis GN=LGMN PE=2 SV=1[more]
LGMN_HUMAN2.079e-3759.29Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1[more]
LGMN_PONAB3.546e-3759.46Legumain OS=Pongo abelii GN=LGMN PE=2 SV=1[more]
LGMN_MOUSE1.032e-3661.74Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1[more]
LGMN_BOVIN2.542e-3558.41Legumain OS=Bos taurus GN=LGMN PE=1 SV=1[more]
HGLB_SCHJA4.804e-2658.95Hemoglobinase OS=Schistosoma japonicum GN=HAEM PE=... [more]
HGLB_SCHMA6.275e-2651.89Hemoglobinase OS=Schistosoma mansoni PE=1 SV=3[more]
GPI8_CAEEL3.230e-1436.94Putative GPI-anchor transamidase OS=Caenorhabditis... [more]
GPI8_DROME3.571e-1340.63Putative GPI-anchor transamidase OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617380 ID=DN617380; Name=DN617380; organism=Citrus sinensis; type=EST; length=512bp
ACTAGCTCCAGCAACCAATCAACCCCCTTCAAAAAACCATGACGCGCCTT
GCCTCCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGA
TGGAAGCAGAGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCT
ATAGGTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGAT
GATTCTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTT
CTGGAATTACAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGA
GGAAAGGTGGGCTGAAGGATGAAAATATTATTGTTTTCATGTATGATGAC
ATCGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCC
CCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAG
ATGTTACTGTTGAAAACTTTTTTGCTGTTGTCCTGGGAAATAAAACAGCT
CTTACAGGGGGC
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