DN617380

Overview
NameDN617380
Unique NameDN617380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617380_ssr192 microsatellite DN617380_ssr192:192..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:14..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   36 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLG 488
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTG 137          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_MOUSE (GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   66 ITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLG 488
            +  L ALA ++ GS   AG I     +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G
Sbjct:   11 VATLAALALLSLGS-SAAGHI---EDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTG 137          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  219 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVV 482
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLL 128          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 3
Query:   51 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLG 488
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTG 137          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  219 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLG 488
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTG 137          
BLAST of DN617380 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  219 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLG 488
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTG 137          
The following BLAST results are available for this feature:
BLAST of DN617380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GPI8_PONAB7.956e-1329.30GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_MOUSE7.956e-1333.33GPI-anchor transamidase OS=Mus musculus GN=Pigk PE... [more]
GPI8_YEAST2.315e-1240.00GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_HUMAN2.315e-1230.92GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN3.948e-1237.50GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_PIG1.500e-1137.50GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617380 ID=DN617380; Name=DN617380; organism=Citrus sinensis; type=EST; length=512bp
ACTAGCTCCAGCAACCAATCAACCCCCTTCAAAAAACCATGACGCGCCTT
GCCTCCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGA
TGGAAGCAGAGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCT
ATAGGTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGAT
GATTCTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTT
CTGGAATTACAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGA
GGAAAGGTGGGCTGAAGGATGAAAATATTATTGTTTTCATGTATGATGAC
ATCGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCC
CCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAG
ATGTTACTGTTGAAAACTTTTTTGCTGTTGTCCTGGGAAATAAAACAGCT
CTTACAGGGGGC
back to top