DN617362

Overview
NameDN617362
Unique NameDN617362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617362 vs. ExPASy Swiss-Prot
Match: CALSA_ARATH (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 7.611e-32
Identity = 70/240 (29.17%), Postives = 120/240 (50.00%), Query Frame = 1
Query:    1 LQAALDIVLSFNAWRSLKCTQILRYLLKFA--------VAAVWAVILPIWQSQGS------LYNFAVAIYLVPNILAAFLFFLPQLSRIMEQSNSLIVRLFMWWGQPKLYVGRDLHEGMFQLLKYTLFWILLLICKLPFSYYVEILPLIRSSKLIMKLHVDNYEWHEFFPNVTHNIGVVIAIWAPIVLVYFMDTQIWYSIFSTLFGGINGALSHLGEIQTLGMLRSRFESVPTAFCRCLV 678
            ++  LD+VL + A+   +   I R +++F         V   +  +L              LY   +  Y    ++   L  LP    + E S+    + F W  Q + +VGR L E +    +Y  FW+++L  K  F+Y+++I PL++ +  I+ L    Y WH+       +   ++++WAP++ +Y MD  IWY++ S + GG+ GA + LGEI+T+ M+  RFES P AF + LV
Sbjct:  537 IECLLDVVLMYGAYSMARGMAISRLVIRFLWWGLGSAFVVYYYVKVLDERNKPNQNEFFFHLYILVLGCYAAVRLIFGLLVKLPACHALSEMSDQSFFQFFKWIYQERYFVGRGLFENLSDYCRYVAFWLVVLASKFTFAYFLQIKPLVKPTNTIIHLPPFQYSWHDIVSKSNDHALTIVSLWAPVLAIYLMDIHIWYTLLSAIIGGVMGAKARLGEIRTIEMVHKRFESFPEAFAQNLV 776          
BLAST of DN617362 vs. ExPASy Swiss-Prot
Match: CALS9_ARATH (Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.778e-26
Identity = 70/261 (26.82%), Postives = 124/261 (47.51%), Query Frame = 1
Query:    4 QAALDIVLSFNAWRSLKCTQILRYLLKF---AVAAVWAVILPIWQSQG--------SLYNFAVAIYLVPNILAAFLFFLPQLSRIMEQSNSL-IVRLFMWWGQPKLYVGRDLHEGMFQLLK-------------------------YTLFWILLLICKLPFSYYVEILPLIRSSKLIMKLHVDNYEWHEFFPNVTHNIGVVIAIWAPIVLVYFMDTQIWYSIFSTLFGGINGALSHLGEIQTLGMLRSRFESVPTAFCRCL 675
            ++ L++++ + A+ + +   + R  L+F    +A+V+   L +   +          LY   +AIY       + L  +P    I  + +   ++R F W  Q + YVGR ++E     +                          Y LFW+++L  K  F+Y+++I PL+  +++I+K +   Y WH+F     +N   V ++WAP+V +Y +D  I+Y+IFS   G + GA   LGEI++L  +   FE  P AF R L
Sbjct:  538 ESVLEVIMMYGAYSTTRRLAVSRIFLRFIWFGLASVFISFLYVKSLKAPNSDSPIVQLYLIVIAIYGGVQFFFSILMRIPTCHNIANKCDRWPVIRFFKWMRQERHYVGRGMYERTSDFINLLPINFNDYYTVVFLLVWEKQQTYLYLLFWLVVLSAKFSFAYFLQIKPLVGPTRMIVKQNNIPYSWHDFVSRKNYNALTVASLWAPVVAIYLLDIHIFYTIFSAFLGFLLGARDRLGEIRSLEAIHKLFEEFPGAFMRAL 798          
The following BLAST results are available for this feature:
BLAST of DN617362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSA_ARATH7.611e-3229.17Callose synthase 10 OS=Arabidopsis thaliana GN=CAL... [more]
CALS9_ARATH4.778e-2626.82Callose synthase 9 OS=Arabidopsis thaliana GN=CALS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01B17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617362 ID=DN617362; Name=DN617362; organism=Citrus sinensis; type=EST; length=756bp
CTGCAAGCTGCATTGGATATAGTCCTCAGCTTCAATGCTTGGAGGAGCTT
GAAATGTACCCAAATACTAAGATACCTTCTGAAATTTGCAGTCGCTGCTG
TGTGGGCAGTGATTCTGCCAATTTGGCAAAGCCAGGGATCTTTATATAAT
TTTGCTGTTGCAATTTATTTGGTGCCCAATATATTGGCTGCTTTTCTATT
TTTTCTTCCGCAATTGTCGAGAATTATGGAGCAGTCAAACTCACTTATCG
TCAGACTTTTTATGTGGTGGGGTCAGCCGAAACTGTATGTTGGAAGAGAC
TTGCATGAAGGCATGTTCCAACTTCTGAAATATACATTGTTTTGGATCCT
GTTGCTAATCTGCAAGCTACCATTCAGCTATTACGTGGAGATATTGCCAC
TAATCAGATCTTCGAAGTTGATTATGAAGTTGCATGTCGATAACTATGAG
TGGCATGAATTCTTTCCCAATGTAACCCATAATATTGGAGTTGTTATAGC
AATATGGGCTCCAATTGTCCTGGTGTATTTTATGGATACTCAAATATGGT
ATTCCATATTTTCTACTCTTTTTGGTGGGATAAATGGGGCATTAAGCCAT
TTGGGTGAGATACAAACGCTTGGGATGTTGCGTTCTAGATTTGAATCTGT
GCCAACAGCTTTTTGTCGGTGTCTTGTGCCATCGTCAGATGTAGATACAA
AGCGAAGATACATGGATGAGTCTACGGAACGAAGGAATATTGCAAATTTT
TCTCAT
back to top