DN617351

Overview
NameDN617351
Unique NameDN617351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:15..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 4.645e-52
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG------GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G          +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.066e-52
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG------GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G          +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 7.923e-52
Identity = 92/148 (62.16%), Postives = 120/148 (81.08%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK     +  + G TEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  243 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.765e-51
Identity = 94/151 (62.25%), Postives = 117/151 (77.48%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQES------HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y++G+G          +   T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 200.29 bits (508), Expect = 6.707e-51
Identity = 93/145 (64.14%), Postives = 116/145 (80.00%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GKG  E++ G T FDRT+K ITPMGGF HYG +K+D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  241 KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEAN-GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.494e-50
Identity = 92/151 (60.93%), Postives = 116/151 (76.82%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQES------HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK++++G+G          +   T +D T K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR A+E I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 2.549e-50
Identity = 95/151 (62.91%), Postives = 120/151 (79.47%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG------GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G          +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  243 KTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.678e-50
Identity = 93/145 (64.14%), Postives = 115/145 (79.31%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GKG  E++   TEFDRT+K ITPMGGF HYG + +D++++KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  241 KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.158e-49
Identity = 92/145 (63.45%), Postives = 113/145 (77.93%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GKG  E +   T FDRT+K I PMGGF HYG+V +D++M+KG   G KKRVVTLR+SL   TSR A+EE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  241 KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.680e-49
Identity = 92/145 (63.45%), Postives = 113/145 (77.93%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G  G ES +G TEFDRT+K I PMGGF  YG VK+D++++KG   G KKR+VT+R+SL   TSR A E + +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  241 KTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_BOVIN4.645e-5263.5860S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_HUMAN6.066e-5263.5860S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_CAEBR7.923e-5262.1660S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_BOVIN1.765e-5162.2560S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_YEAST6.707e-5164.1460S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3L_HUMAN1.494e-5060.9360S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_MACFA2.549e-5062.9160S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_KLULA5.678e-5064.1460S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_CANGA2.158e-4963.4560S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_DEBHA3.680e-4963.4560S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bp
TTTAAATTTAAAAATATTCAATCAGAATAAAGCACGACCATTCTCTTAAA
AAATAAAATAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAAAA
ACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTAAC
TATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATGCG
TCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAA
ACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAA
CGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTCTT
AGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATAC
CATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCA
AATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTA
AACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGCTC
TGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAGCC
ACCTTACGCAGACCTCTGTGAGTCTT
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