DN617351

Overview
NameDN617351
Unique NameDN617351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:15..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  252 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 608
            R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+    G       E DITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  252 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 608
            R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.009e-22
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = -1
Query:  252 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 608
            R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+ G+     +   ++ E +ITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I +I   SK
Sbjct:  233 RHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -1
Query:  246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611
            LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I +I   SK G
Sbjct:  232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R V  IG W P  V ++V   GQ GYH RTE NK++ K+G  G E              ITP GGF HYG+++++Y+++KG   GP KR++ LR+++  Q   + + E  I +I T+SK G
Sbjct:  230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R    IG W P R+ +TV  AGQ G+H RTE NK++ K+G+ G E              I P GGF +YG+VK++Y+++KG   GP KR+V LR+++     +  L E  + ++ T SK G+
Sbjct:  228 RHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = -1
Query:  246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611
            LR V  +G WHPAR+S+ V + GQ GYH RTE NK++  +G  G               DITP GGF  YG+V+++Y++IKG   GP KR+V +R++ ++  +  A +  +I ++   SK G
Sbjct:  228 LRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = -1
Query:  246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611
            LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I +I   SK G
Sbjct:  232 LRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R V  IG W P+R  +TVA+AGQ GYH RTE NKK+ K+    +               I P GGF  YG+VK+DY+++KG   GP KR+V LRQ +  + +  + +  +I +I T SK G
Sbjct:  229 RHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPI--RPNNKSEDMPQINYISTKSKQG 335          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R V  +G W+P R+ + V + GQ GYH RTE NK++ K+G   +E              ITP GGF HYG++++DY+M+KG   GP KR+V +R ++  +   +  +  +I ++ T SK G
Sbjct:  233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_THEGJ1.722e-2242.0250S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_PYRKO1.722e-2242.0250S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEON5.009e-2241.1850S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_METAC3.039e-1940.9850S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_METJA5.183e-1939.6750S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_META36.770e-1938.5250S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_METTP1.155e-1839.3450S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_METMA1.155e-1839.3450S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METS32.572e-1841.3250S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_UNCMA3.360e-1837.1950S ribosomal protein L3P OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bp
TTTAAATTTAAAAATATTCAATCAGAATAAAGCACGACCATTCTCTTAAA
AAATAAAATAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAAAA
ACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTAAC
TATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATGCG
TCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAA
ACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAA
CGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTCTT
AGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATAC
CATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCA
AATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTA
AACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGCTC
TGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAGCC
ACCTTACGCAGACCTCTGTGAGTCTT
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