DN617351
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -1 Query: 252 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 608 R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ G E DITP GGFPHYGI++ D+LMI+G G KR++ +R ++ + +E +I ++ SK Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -1 Query: 252 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 608 R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ D E +ITP GGFPHYGIV+ D+LMI+G G KR++ +R ++ + +E +I ++ SK Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.009e-22 Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = -1 Query: 252 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 608 R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ G+ + ++ E +ITP GGFPHYGI++ D+LMI+G G KR++ +R ++ + +E +I +I SK Sbjct: 233 RHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -1 Query: 246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611 LR+V +GA++P+RVS+ V + GQ GYH RTE NK++ K+G G+E +TP GGF +YG+V+ DY++IKG GP KR++ LR + + + L E I +I SK G Sbjct: 232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19 Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608 R V IG W P V ++V GQ GYH RTE NK++ K+G G E ITP GGF HYG+++++Y+++KG GP KR++ LR+++ Q + + E I +I T+SK G Sbjct: 230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19 Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = -1 Query: 243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608 R IG W P R+ +TV AGQ G+H RTE NK++ K+G+ G E I P GGF +YG+VK++Y+++KG GP KR+V LR+++ + L E + ++ T SK G+ Sbjct: 228 RHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18 Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = -1 Query: 246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611 LR V +G WHPAR+S+ V + GQ GYH RTE NK++ +G G DITP GGF YG+V+++Y++IKG GP KR+V +R++ ++ + A + +I ++ SK G Sbjct: 228 LRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18 Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = -1 Query: 246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611 LR++ +G+++P+RVS+ V + GQ GYH RTE NK++ K+G G+E +TP GGF +YG+V+ DY++IKG GP KR++ LR + + + L E I +I SK G Sbjct: 232 LRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18 Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608 R V IG W P+R +TVA+AGQ GYH RTE NKK+ K+ + I P GGF YG+VK+DY+++KG GP KR+V LRQ + + + + + +I +I T SK G Sbjct: 229 RHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPI--RPNNKSEDMPQINYISTKSKQG 335
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18 Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608 R V +G W+P R+ + V + GQ GYH RTE NK++ K+G +E ITP GGF HYG++++DY+M+KG GP KR+V +R ++ + + + +I ++ T SK G Sbjct: 233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337 The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bpback to top |