DN617351

Overview
NameDN617351
Unique NameDN617351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:15..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R +  +G W P+R  +TV +AGQ GYH RTE NK++ K+G             D +E D + P GGF  YG+V++DY+MIKG   GP KR+V LR+++  + +    E  +I +I T+SK G
Sbjct:  230 RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  I +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--IAYISTESKQGN 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R V  IG W P R  +TVA  GQ GYH RTE NKK+ K+G             D +E D I P GGF  YG VK++Y+++KG   GP KR+V LR+ +   + ++   E  I +I T+SK G
Sbjct:  230 RHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPE--ISYISTTSKQG 336          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+ G+E              ITP GGF HYG+++  Y+++ G   GP KR++ +R ++  +  +   + + I ++ T+SK G
Sbjct:  226 RRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = -1
Query:  243 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 608
            R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = -1
Query:  246 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 611
            LR++  +G +   RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I  I   SK G
Sbjct:  232 LRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337          
The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_METTH3.360e-1840.9850S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_METMP3.360e-1842.6250S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM74.388e-1841.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM64.388e-1841.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM54.388e-1841.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METST5.731e-1842.6250S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_ARCFU5.731e-1835.5450S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METVS7.485e-1840.9850S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA7.485e-1840.9850S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METBF1.412e-1638.5250S ribosomal protein L3P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bp
TTTAAATTTAAAAATATTCAATCAGAATAAAGCACGACCATTCTCTTAAA
AAATAAAATAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAAAA
ACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTAAC
TATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATGCG
TCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAA
ACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAA
CGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTCTT
AGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATAC
CATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCA
AATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTA
AACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGCTC
TGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAGCC
ACCTTACGCAGACCTCTGTGAGTCTT
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