DN617351

Overview
NameDN617351
Unique NameDN617351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:15..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = -1
Query:  318 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 608
            R +  IG   P+RV +TV  AGQ GYH RTE NK++ K+G+ G+E              +TP GGF +YG+V+ DY+MI G   GPKKR++ +R ++
Sbjct:  236 RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R +  +G W+P  V + V + GQ GY  RT+ NK++ K+G+ G               DITP GGF HYG++++ Y+MIKG   GP KR++ +R ++ K      +    I+F+ T SK G
Sbjct:  233 RHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENGT--------------DITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVP--AIEFVSTQSKQG 337          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R +  +G WHP  V + V + GQ GY  RTE NK++ K+G  G E              ITP GGF HYG+V+  Y++IKG   GP KR+V +R ++  +     +    I F+   S+ G
Sbjct:  233 RHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI--RQGEHTVRTPAINFVSVQSQQG 337          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  282 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 611
            LR+V  +G W PA VS+ V +AGQ GYH RT+ NK++ K+     E              + P GGF +YG+V+ +Y++IKG   GP KR++ LR+    + S +   +I
Sbjct:  232 LRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R V  +G W+P  V + V ++GQ GY  RTE NK++ K+G+ G E              ITP GGF +YG++++ Y++IKG   GP KR++ +R ++  +     +    I+F+   SK G
Sbjct:  233 RHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = -1
Query:  327 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 626
            K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG+VK  Y++I+G   G +KR+V LR
Sbjct:  229 KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 47/121 (38.84%), Postives = 63/121 (52.07%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R V  +G W P  V + V   GQ GYH RTE NK++ K+G+ G E              ITP GGF +YG V+  Y++IKG   GP KR+V +R ++  +     + E  I FI   SK G
Sbjct:  233 RHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = -1
Query:  327 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 626
            K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG++K  Y++I+G   G +KR+V LR
Sbjct:  229 KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = -1
Query:  327 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 626
            K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G  G E              ITP  GFPHYG++K  Y++++G   G +KR+V LR
Sbjct:  229 KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 608
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_METKA1.844e-1643.3050S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_METPE3.145e-1636.3650S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_METMJ7.006e-1636.3650S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_METBU9.149e-1637.2750S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METB62.038e-1534.7150S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_PYRAE4.541e-1544.0050S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METHJ7.746e-1538.8450S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_PYRAR1.321e-1442.0050S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_PYRCJ2.254e-1441.0050S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_HALSA3.844e-1433.6150S ribosomal protein L3P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bp
TTTAAATTTAAAAATATTCAATCAGAATAAAGCACGACCATTCTCTTAAA
AAATAAAATAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAAAA
ACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTAAC
TATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATGCG
TCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAA
ACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAA
CGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTCTT
AGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATAC
CATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCA
AATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTA
AACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGCTC
TGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAGCC
ACCTTACGCAGACCTCTGTGAGTCTT
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