DN617351
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14 Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 608 R++ +G W+P+RV TV + GQ GYH RTE+NK++ + G + TP GGFP+YG V Y ++KG GP++R+V R ++ ++ RL + +++++ T+S G Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14 Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = -1 Query: 255 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSS 626 K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G G E ITP GF HYG+VK Y++I+G G +KR+V LR + E ++ +I + S Sbjct: 233 KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLRYPVRPPKKAPPAAEPQVVWISSQS 341
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = -1 Query: 246 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 626 K + R + +G WHP V TV +AGQ GY RT N +V K K G+++ T I GGF HYG+VK+DY+++ G GP KR++ +R ++ ++ +K+ +I SK G Sbjct: 218 KNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK-GEDADT-----------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---IKFIDTSSKFG 608 R + +G W P V + V GQ G+ RTE NK++ K+G+ E I P GGF HYG+V+++Y++IKG GP KR+V +R + +R+ ++I+ ++++ SK G Sbjct: 229 RHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13 Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKIKFIDTSSKFG 608 R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GGF +YG V Y ++KG GP KR+V R ++ RL + +++++ T+S G Sbjct: 234 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRL---DPEVRYVSTASNQG 336
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = -1 Query: 327 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 626 K +G R+ IG PA + FT R GQ G+H RTE NK+V K+G G E ITP GF HYG+++ Y++I+G G KKR+V LR Sbjct: 229 KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13 Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = -1 Query: 246 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEK--DITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 626 K + R + +G WHP V TV +AGQ G+H RT N ++ K FD + DI GGF +YGIV++DY+++ G GP KR++ +R + +R A+E I++ ++ SK G Sbjct: 216 KNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13 Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = -1 Query: 246 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 626 K + R + +G WHP V TV +AGQ G+ RT N +V K G ++ E D I GGF HYG VK+DY+++ G G KR++ +R ++ +EE+K+++I SK G Sbjct: 218 KNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYG-------------NKEEVDSINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = -1 Query: 318 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 608 R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+G + T GGF +YG V Y ++KG GP KR+V R ++ Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = -1 Query: 246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608 R++ +G W+P+RV TV + GQ GYH RTE+NK++ ++G G + T GGF YG V Y +IKG GP +R++ R ++ + S + +++++ T+S G Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNGDEP---------------TVDGGFVGYGEVDGPYALIKGSLPGPDQRLLRFRTAV--RPSDQPRLDPEVRYVSTASNQG 338 The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bpback to top |