DN617351

Overview
NameDN617351
Unique NameDN617351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:15..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 608
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = -1
Query:  255 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSS 626
            K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G  G E              ITP  GF HYG+VK  Y++I+G   G +KR+V LR  +          E ++ +I + S
Sbjct:  233 KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLRYPVRPPKKAPPAAEPQVVWISSQS 341          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = -1
Query:  246 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 626
            K  +  R +  +G WHP  V  TV +AGQ GY  RT  N +V K  K G+++ T           I   GGF HYG+VK+DY+++ G   GP KR++ +R    ++     ++ +K+ +I   SK G
Sbjct:  218 KNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK-GEDADT-----------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---IKFIDTSSKFG 608
            R +  +G W P  V + V   GQ G+  RTE NK++ K+G+   E              I P GGF HYG+V+++Y++IKG   GP KR+V +R +     +R+  ++I+   ++++   SK G
Sbjct:  229 RHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKIKFIDTSSKFG 608
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GGF +YG V   Y ++KG   GP KR+V  R ++      RL   + +++++ T+S  G
Sbjct:  234 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRL---DPEVRYVSTASNQG 336          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = -1
Query:  327 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 626
            K  +G R+   IG   PA + FT  R GQ G+H RTE NK+V K+G  G E              ITP  GF HYG+++  Y++I+G   G KKR+V LR
Sbjct:  229 KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  246 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEK--DITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 626
            K  +  R +  +G WHP  V  TV +AGQ G+H RT  N ++ K              FD  +   DI   GGF +YGIV++DY+++ G   GP KR++ +R     + +R A+E I++ ++   SK G
Sbjct:  216 KNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = -1
Query:  246 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 626
            K  +  R +  +G WHP  V  TV +AGQ G+  RT  N +V K G             ++ E D I   GGF HYG VK+DY+++ G   G  KR++ +R    ++     +EE+K+++I   SK G
Sbjct:  218 KNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYG-------------NKEEVDSINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  318 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 608
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +G+G +                T  GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct:  235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  246 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 608
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++ ++G G +                T  GGF  YG V   Y +IKG   GP +R++  R ++  + S     + +++++ T+S  G
Sbjct:  235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNGDEP---------------TVDGGFVGYGEVDGPYALIKGSLPGPDQRLLRFRTAV--RPSDQPRLDPEVRYVSTASNQG 338          
The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_HALS33.844e-1433.6150S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_PYRIL5.020e-1437.1050S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_THEVO8.564e-1434.6550S ribosomal protein L3P OS=Thermoplasma volcaniu... [more]
RL3_METLZ8.564e-1433.0650S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_NATPD1.118e-1334.4350S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_THENV1.461e-1342.0050S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_PICTO3.254e-1334.1150S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_THEAC7.250e-1334.3850S ribosomal protein L3P OS=Thermoplasma acidophi... [more]
RL3_HALMA2.109e-1237.1150S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_HALWD4.699e-1232.2350S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bp
TTTAAATTTAAAAATATTCAATCAGAATAAAGCACGACCATTCTCTTAAA
AAATAAAATAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAAAA
ACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTAAC
TATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATGCG
TCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAA
ACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAA
CGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTCTT
AGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATAC
CATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCA
AATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTA
AACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGCTC
TGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAGCC
ACCTTACGCAGACCTCTGTGAGTCTT
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