DN617347

Overview
NameDN617347
Unique NameDN617347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5714 contig Csv1_Contig5714:1..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617347 vs. ExPASy Swiss-Prot
Match: U496E_ARATH (UPF0496 protein At3g28310/At3g28320 OS=Arabidopsis thaliana GN=At3g28310/At3g28320 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 6.194e-26
Identity = 66/162 (40.74%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  150 AQYSADLSLYEAACRLDPDLQSFDATIQERTSRVIHKLSAGVEVHSLSFDSL-KEVTG-SLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQE-GVDEKRYVRTLEELKKFKDAGDPFTE 626
            ++YS  +  Y AAC   PDL+SFD+ IQ+RTS +I  L+   +  S+S  ++ KEV    L+E+++ V  VI EC +++W N  L  LV+DYF ++++TL     +  C+  A+  Q  I+ AV QF ++ E ++ GV +KRY +TLEEL KFK  G+PF +
Sbjct:    9 SRYSEHVDAYRAACGHHPDLKSFDSKIQQRTSNLIDSLTVEAKTGSVSPHAVHKEVIDIHLVEVSKAVADVITECGEEVWENGTLQSLVKDYFNSTMETLKIFETVTQCVHEAKRGQRYIKAAVAQFKKDSEEKDVGVKKKRYGKTLEELMKFKAMGNPFDD 170          
BLAST of DN617347 vs. ExPASy Swiss-Prot
Match: U496C_ARATH (UPF0496 protein At3g28270 OS=Arabidopsis thaliana GN=At3g28270 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.074e-25
Identity = 63/153 (41.18%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  168 LSLYEAACRLDPDLQSFDATIQERTSRVIHKLSAGVEVHSLS-FDSLKEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEE-VELQEGVDEKRYVRTLEELKKFKDAGDPF 620
            +S Y++AC   P L+SFDA++Q+RT+++I  L+   +  S S  D+  E++  L+E+ Q V   I E + D+W+NQ L  LV  YFE + KTL+    +ENC++ A   QL+I+ A+ +F++E  E   G  +K+Y +TLE+LK FK+ GDPF
Sbjct:   16 MSAYKSACEEHPKLKSFDASLQQRTNKMIDSLTVEDKNGSSSPHDAHMELSKHLVEVTQGVADFITEIEDDVWDNQALKYLVLAYFENTKKTLEIFKTIENCVENAEMGQLLIREALAEFEKESAEKDVGGKKKKYEKTLEDLKSFKEMGDPF 168          
BLAST of DN617347 vs. ExPASy Swiss-Prot
Match: U496D_ARATH (UPF0496 protein At3g28290/At3g28300 OS=Arabidopsis thaliana GN=At3g28290 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 62/169 (36.69%), Postives = 96/169 (56.80%), Query Frame = 3
Query:  153 QYSADLSLYEAACRLDPDLQSFDATIQERTSRVIHKLSAGVEVHSLSFD---SLKEVTGSLLEMNQEVVKVILECKKDIWNNQDLFGLVEDYFETSIKTLDFCTVLENCLKRARNSQLIIQLAVKQFDEEVELQEGVDEKRYVRTLEELKKFKDAGDPFT-EEFFVLFQ 647
            +YSA L  Y +AC   P+L+SFD+ +Q++TS +I+  ++  +   +      + KE T  L E+NQ+V   I+   + +W N  L  LVE YFE++ KTLD    +   +  A+  +  I  AV QF+++ E   G   KRY  TL ELKKF+  G+PF  ++F  LF+
Sbjct:   10 KYSAHLRAYNSACGDHPELKSFDSELQQKTSNLINSFTSDAKTGLVPLPQHAAYKEFTKHLAEVNQQVSDYIIGYGEVVWENSTLRSLVETYFESAKKTLDIAENVTEYVDEAKRGERYIVAAVAQFEKDKENDVGKKTKRYENTLRELKKFEAMGNPFDGDKFTTLFK 178          
The following BLAST results are available for this feature:
BLAST of DN617347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
U496E_ARATH6.194e-2640.74UPF0496 protein At3g28310/At3g28320 OS=Arabidopsis... [more]
U496C_ARATH3.074e-2541.18UPF0496 protein At3g28270 OS=Arabidopsis thaliana ... [more]
U496D_ARATH1.093e-2236.69UPF0496 protein At3g28290/At3g28300 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617347 ID=DN617347; Name=DN617347; organism=Citrus sinensis; type=EST; length=652bp
TTGCATGGTTTGCTTTTATTGAAGGATCAAAGTAAGAGAAATTCTTATCA
CCTTTGTCATTTCAGCTGAAATTCAGTATGATGGGAGGACAATCTAGCAA
GAAGAAAGGTGGTGATGCACCATCGCCACCTCTTGAAGTGATCACTGATG
CCCAATATTCAGCTGACCTTAGCTTGTATGAGGCTGCATGTAGACTTGAT
CCTGACTTGCAATCCTTTGACGCCACCATTCAAGAGCGTACTAGCCGTGT
TATCCACAAGCTTTCAGCTGGTGTTGAGGTCCATTCCTTATCTTTTGACT
CACTCAAAGAGGTCACTGGGTCTCTTCTTGAAATGAATCAAGAAGTGGTC
AAAGTCATTCTAGAATGCAAGAAAGATATATGGAACAATCAAGATTTGTT
TGGTTTGGTTGAGGACTACTTTGAGACTAGTATCAAGACTTTGGATTTTT
GCACTGTTCTAGAGAATTGCCTTAAGCGTGCTAGAAACAGTCAATTAATT
ATTCAGCTTGCAGTTAAGCAATTCGACGAAGAAGTAGAATTACAGGAGGG
GGTTGATGAGAAGAGGTATGTGAGGACATTGGAGGAATTAAAGAAGTTTA
AGGATGCCGGGGACCCATTTACAGAAGAGTTCTTTGTGTTGTTTCAATCA
GT
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