DN617346

Overview
NameDN617346
Unique NameDN617346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617346_ssr4 microsatellite DN617346_ssr4:4..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6236 contig Csv1_Contig6236:22..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.255e-40
Identity = 74/132 (56.06%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG+
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGV 187          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.255e-40
Identity = 74/132 (56.06%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG+
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGV 181          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.796e-40
Identity = 78/139 (56.12%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  117 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKW-CLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            G G W    ATFY              YGNLYSQGYGT+TAALSTALFN GLSCGSCYE++C  D +  CLPG  T+ VTATNFC          GGWCNPP++HFDL++P F  IA++ AG+VPV++RRV C R+GG+
Sbjct:   24 GLGQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGV 162          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.812e-39
Identity = 76/138 (55.07%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  111 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            A G  GW +  ATFY              YGNLYS GYGT+TAALSTALFNNG SCG+C+E++C      CL GT+ VTATN C          GGWCNPP+ HFD+++P F  IAQ RAGVVPV YRRV C ++GGI
Sbjct:   21 AGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGI 157          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 8.995e-39
Identity = 74/141 (52.48%), Postives = 89/141 (63.12%), Query Frame = 3
Query:  111 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            A    GW    ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C    DP+WC  G ++ VTATNFC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA+RRVPC RRGG+
Sbjct:   28 AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGV 168          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 8.995e-39
Identity = 70/136 (51.47%), Postives = 90/136 (66.18%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GW+ A ATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C    D  WC PG ++ +TATNFC          GGWCNPP+ HFD++QP ++ I  YR G++PV Y+RVPC ++GG+
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGV 168          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.534e-38
Identity = 71/135 (52.59%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W+ A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGV 186          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.614e-38
Identity = 76/134 (56.72%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W  A ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ I C     +WC PGT I VTATNFC          GGWCNPP++HFD+SQP ++ IA YRAG+VPV YRRVPC R GGI
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGI 158          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 7.614e-38
Identity = 71/135 (52.59%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W  A ATFY              YGNLYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGL 173          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.614e-38
Identity = 72/136 (52.94%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GW+ A ATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY+I C     P+WCL G +I +TATNFC          GGWCNPP+ HFD++QP F  IA+Y+AG+VP+ Y++V C R GG+
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGM 162          
The following BLAST results are available for this feature:
BLAST of DN617346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP26_ARATH1.255e-4056.06Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH1.255e-4056.06Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXPA6_ORYSJ2.796e-4056.12Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ1.812e-3955.07Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ8.995e-3952.48Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ8.995e-3951.47Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ1.534e-3852.59Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ7.614e-3856.72Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ORYSJ7.614e-3852.59Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH7.614e-3852.94Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617346 ID=DN617346; Name=DN617346; organism=Citrus sinensis; type=EST; length=524bp
TTCCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTTCTCCAAG
AAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTC
CTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTT
TCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTAT
GGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCAC
GGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGT
GTGTTAATGACCCCAAATGGTGCCTGCCCGGCACCATTATGGTCACAGCT
ACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAGGCGGTTG
GTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAAC
ACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTA
CCCTGCGGAAGAAGGGGAGGCATC
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