DN617346

Overview
NameDN617346
Unique NameDN617346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617346_ssr4 microsatellite DN617346_ssr4:4..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6236 contig Csv1_Contig6236:22..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.029e-34
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  111 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN----DPKWCLPG----TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            A   G W +A ATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C      D + CLP     +I+VTAT+ C          GGWCNPP  HFDLSQP F  IA++++G+VPV+YRRV C R+GG+
Sbjct:   24 AAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGM 169          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.755e-34
Identity = 67/134 (50.00%), Postives = 85/134 (63.43%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W +A ATFY              YGN+YS GYGTNT ALS+AL+ +G SCG+CY + C  +  +WC  GT + VTATN+C          GGWCNPP++HFD+SQP ++ IA Y +G+VPV Y R PC R GGI
Sbjct:   27 WTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGI 160          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.994e-34
Identity = 69/135 (51.11%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W  A ATFY              YGNLY QGYG + AALS ALFN+G SCG CY I C     P+WC  GT + VTATN C          GGWCNPP+ HFD+SQP ++ I  Y+AG+VPV Y+RV C R+GG+
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGV 162          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.138e-33
Identity = 64/134 (47.76%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  123 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            G W  A ATFY              YGNL++ GYG +TAALST LFN+G  CG C++I C   P      + +VTATN C          GGWCNPP+ HFD+++P F  +A +RAG++PVAYRRVPC R GG+
Sbjct:   35 GPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGM 168          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.535e-33
Identity = 69/136 (50.74%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W  A ATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+++CV     C  G+  I VTATN C          GG  WCNPP+ HFDLS+P F  +A +RAG+VPV YRRVPC R GG+
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGL 171          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.535e-33
Identity = 65/136 (47.79%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GW    ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY I C     P+WC  G  + +TATN C          GGWCNPP+ HFD+++P +  I  Y+AG++PV Y++V C R+GGI
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGI 161          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.647e-33
Identity = 68/145 (46.90%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  108 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            H N G    G W  A ATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KCV+ P  C  G   ++VTATN C          GGWCNPP++HFDLS P F  IAQ +AG+VP++YRRVPC + GGI
Sbjct:   31 HRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGI 175          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.647e-33
Identity = 66/137 (48.18%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KCV+ P  C  G+   +VTATN C          GGWCNPP+ HFDL++P F  IA ++AG++PV+YRRV C + GGI
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGI 163          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 68/136 (50.00%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GW+   ATFY              YGNLY QGYG N AALST LFNNG SCG CY I C  D  P  C  GT I VT TNFC          GGWCN  + HFD+SQP +++I  Y AG+VP+ Y++V C R GG+
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFC--PPNYDLPYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGV 155          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.221e-29
Identity = 63/135 (46.67%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            W+   ATFY              YGNLY QGYG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+C          GGWCN  + HFD+SQP +++I  Y AG++P+ Y++V C R GG+
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYC--PPNYDLPYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGV 155          
The following BLAST results are available for this feature:
BLAST of DN617346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP21_ORYSJ1.029e-3447.95Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ1.755e-3450.00Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP31_ORYSJ2.994e-3451.11Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH1.138e-3347.76Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP30_ORYSJ2.535e-3350.74Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP25_ORYSJ2.535e-3347.79Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ5.647e-3346.90Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH5.647e-3348.18Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP18_ORYSJ3.099e-3150.00Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ2.221e-2946.67Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01B09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617346 ID=DN617346; Name=DN617346; organism=Citrus sinensis; type=EST; length=524bp
TTCCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTTCTCCAAG
AAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTC
CTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTT
TCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTAT
GGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCAC
GGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGT
GTGTTAATGACCCCAAATGGTGCCTGCCCGGCACCATTATGGTCACAGCT
ACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAGGCGGTTG
GTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAAC
ACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTA
CCCTGCGGAAGAAGGGGAGGCATC
back to top