DN617344

Overview
NameDN617344
Unique NameDN617344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:1209..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.106e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISN+T+VAEVFSRID KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.669e-28
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  371 VQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.669e-28
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  371 VQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.669e-28
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  371 VQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA LEK Y
Sbjct:  371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAXLEKXY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSV EVFSRI+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVVEVFSRINSKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSV EVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.940e-27
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRA+CMISN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE EFSEAREDLAALEKDY
Sbjct:  371 VQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEVEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            V RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            V RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of DN617344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TBA2_ELEIN5.106e-2895.16Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA2_CHLRE6.669e-2890.32Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA1_VOLCA6.669e-2890.32Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA1_CHLRE6.669e-2890.32Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA_AVESA1.486e-2793.55Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA3_MAIZE1.486e-2795.16Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA2_ORYSJ1.486e-2795.16Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBAE_PHYPO1.940e-2791.94Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA_PLAYO2.534e-2791.94Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK2.534e-2791.94Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01B08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617344 ID=DN617344; Name=DN617344; organism=Citrus sinensis; type=EST; length=420bp
TTTTTTTTTTTTATAGAACCCATAAACTTGATAAGCATAACAAATTTCAA
CAAGCTTTGAAATTGAGCGAGAATCAAAGAGAGGAATAAGGTTTTCAACA
CAAAATAAAGGCACGAAGCGTCACTAAAGCACAAGACATCATACTAAAAC
GCACAGATAATTGCACACTTAGATCCCTCAGTCCTCCTCACCATAATCTT
CCTCGCCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGG
GCAGCAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTC
GCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACT
TGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATC
ATGCAAACAGCCCTCTGCAC
back to top