DN617344

Overview
NameDN617344
Unique NameDN617344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:1209..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.310e-27
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.323e-27
Identity = 55/62 (88.71%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  160 VQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 221
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.323e-27
Identity = 55/62 (88.71%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:   81 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 142
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of DN617344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TBA2_PELFA3.310e-2788.71Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_OCTVU4.323e-2788.71Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA_ENTDO4.323e-2788.71Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA_LYTPI5.646e-2787.10Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_LEPDS5.646e-2787.10Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA_BOMMO5.646e-2787.10Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBAT_ONCMY5.646e-2787.10Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA8_RAT5.646e-2787.10Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE5.646e-2787.10Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN5.646e-2787.10Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617344 ID=DN617344; Name=DN617344; organism=Citrus sinensis; type=EST; length=420bp
TTTTTTTTTTTTATAGAACCCATAAACTTGATAAGCATAACAAATTTCAA
CAAGCTTTGAAATTGAGCGAGAATCAAAGAGAGGAATAAGGTTTTCAACA
CAAAATAAAGGCACGAAGCGTCACTAAAGCACAAGACATCATACTAAAAC
GCACAGATAATTGCACACTTAGATCCCTCAGTCCTCCTCACCATAATCTT
CCTCGCCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGG
GCAGCAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTC
GCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACT
TGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATC
ATGCAAACAGCCCTCTGCAC
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