DN617344

Overview
NameDN617344
Unique NameDN617344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:1209..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  246 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  246 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of DN617344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TBA8_CHICK5.646e-2787.10Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA8_BOVIN5.646e-2787.10Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA3_RAT5.646e-2787.10Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE5.646e-2787.10Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_DROME5.646e-2787.10Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]
TBA3_CHICK5.646e-2787.10Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA3C_HUMAN5.646e-2787.10Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA2_PATVU5.646e-2787.10Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1_PARLI5.646e-2787.10Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]
TBA1_DROME5.646e-2787.10Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617344 ID=DN617344; Name=DN617344; organism=Citrus sinensis; type=EST; length=420bp
TTTTTTTTTTTTATAGAACCCATAAACTTGATAAGCATAACAAATTTCAA
CAAGCTTTGAAATTGAGCGAGAATCAAAGAGAGGAATAAGGTTTTCAACA
CAAAATAAAGGCACGAAGCGTCACTAAAGCACAAGACATCATACTAAAAC
GCACAGATAATTGCACACTTAGATCCCTCAGTCCTCCTCACCATAATCTT
CCTCGCCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGG
GCAGCAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTC
GCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACT
TGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATC
ATGCAAACAGCCCTCTGCAC
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