DN617344

Overview
NameDN617344
Unique NameDN617344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:1209..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.374e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.374e-27
Identity = 54/62 (87.10%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  365 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 426
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.630e-27
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of DN617344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TBA1_APLCA5.646e-2787.10Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBA1C_HUMAN7.374e-2787.10Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
TBA1C_BOVIN7.374e-2787.10Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]
TBA_XENTR9.630e-2785.48Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA_XENLA9.630e-2785.48Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA_TORMA9.630e-2785.48Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]
TBA_ONCKE9.630e-2785.48Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA_NOTVI9.630e-2785.48Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBA4A_RAT9.630e-2785.48Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE9.630e-2785.48Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617344 ID=DN617344; Name=DN617344; organism=Citrus sinensis; type=EST; length=420bp
TTTTTTTTTTTTATAGAACCCATAAACTTGATAAGCATAACAAATTTCAA
CAAGCTTTGAAATTGAGCGAGAATCAAAGAGAGGAATAAGGTTTTCAACA
CAAAATAAAGGCACGAAGCGTCACTAAAGCACAAGACATCATACTAAAAC
GCACAGATAATTGCACACTTAGATCCCTCAGTCCTCCTCACCATAATCTT
CCTCGCCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGG
GCAGCAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTC
GCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACT
TGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATC
ATGCAAACAGCCCTCTGCAC
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