DN617342

Overview
NameDN617342
Unique NameDN617342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:87..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCY-FSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            LKN+MDAQY+GEIGIG+PPQ F+V+FDTGSSNLWVPS  C+   I+C  H +Y + KS+TY E G    I+YG+G
Sbjct:   70 LKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKSSTYVENGTEFAIHYGTG 144          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            LKN++DAQY+G+IGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G S +I+YGSG
Sbjct:   71 LKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSG 145          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            LKN+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G + +I+YGSG
Sbjct:   51 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSG 125          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.425e-21
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  259 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            +PL  FM+ QYFG IG+G+PPQNF+V+FDTGSSNLWVPS++C +FS++C+FH R+  + S+++   G    I YG+G
Sbjct:   63 VPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTG 139          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            L N+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G + +I+YGSG
Sbjct:   46 LTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSG 120          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL N++DAQY+G I IG+PPQ+F V+FDTGSSNLWVPS +C F +I+C  H++Y ++KS+T+ + G +  I YGSG
Sbjct:   59 PLSNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAFHIQYGSG 134          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.402e-21
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            LKN++DAQY+GEIG+G+PPQ F+V+FDTGSSNLWVPS  C    I+C  H +Y S KS+TY + G +  I YGSG
Sbjct:   68 LKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSG 142          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  259 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            +PL N+ D QYFGEIG+G+PPQNF+V FDTGSSNLWVPS +C +FS+ C+ H R+  + S+++   G    I YG+G
Sbjct:   68 VPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANGTKFAIQYGTG 144          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.572e-20
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  208 AGVSGVHHRLG-DSDEDILP--LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            AG + + H  G  S     P  LKN+MDAQY+GEIG+G+P Q F+V+FDTGSSNLW+PS  C F+ I+C  H +Y   KS+TY + G    I YGSG
Sbjct:   46 AGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSG 142          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.801e-20
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL N++D +YFG I IGSPPQNF+VIFDTGSSNLWVPS  C  S +C  HSR++  +S+TY++ G+S  I YG+G
Sbjct:   69 PLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-TSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTG 142          
The following BLAST results are available for this feature:
BLAST of DN617342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CATD_CHICK6.381e-2261.33Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_MOUSE8.334e-2261.33Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_BOVIN1.088e-2161.33Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
NAPSA_MOUSE2.425e-2154.55Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_SHEEP4.136e-2160.00Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
ASPP_AEDAE4.136e-2156.58Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_CHIHA5.402e-2160.00Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
NAPSA_HUMAN1.203e-2054.55Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATD_CLUHA1.572e-2051.55Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATE_HUMAN7.801e-2060.00Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617342 ID=DN617342; Name=DN617342; organism=Citrus sinensis; type=EST; length=487bp
TTCAAACTCAGCTTCAGCAGAAAACCAAAGAACATCATGGAGCAGAAACT
TCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTC
CTGCTTCCTCTAATGGCTTACGGAGAATTGGCTTGAAGAAGCGGCGTCTA
GATCTTCATAGTCTAAATGCTGCAAGAATAACAAGAAAAGAGCGATATAT
GGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGTTTGGGTGATTCAGATG
AAGATATTTTGCCTTTGAAGAACTTTATGGATGCTCAATACTTTGGAGAG
ATTGGTATTGGCTCTCCCCCACAAAATTTCAGTGTCATATTTGATACCGG
CAGTTCCAATCTCTGGGTTCCATCTTCAAAGTGCTATTTCTCTATTTCCT
GCTATTTCCATTCGAGGTACAAGTCCAGAAAATCCAATACATATACCGAA
ATGGGAAAATCCTGTGAAATAAACTATGGATCTGGAT
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