DN617342

Overview
NameDN617342
Unique NameDN617342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:87..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL N++D +YFG IGIG+P Q F+VIFDTGSSNLWVPS  C  S +C  H+R+  ++S+TY    ++  I YG+G
Sbjct:   66 PLVNYLDMEYFGTIGIGTPAQEFTVIFDTGSSNLWVPSIYC-SSPACTNHNRFNPQESSTYQATSQTLSIAYGTG 139          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL N +D +Y+G I IG+PPQ+F+V+FDTGSSNLWVPS  C  S +C  H  +   +S+TY   G++  I+YG+G
Sbjct:   67 PLLNTLDMEYYGTISIGTPPQDFTVVFDTGSSNLWVPSVSC-TSPACQSHQMFNPSQSSTYKSTGQNLSIHYGTG 140          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  274 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            +MDA YFGEI IG+PPQNF V+FDTGSSNLWV S  C  S +C  H+R+   KS+TY   G++  + YG+G
Sbjct:   71 YMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHARFNPSKSSTYYTEGQTFSLQYGTG 140          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            P  N++D+ YFGEI IG+PPQNF ++FDTGSSNLWVPS+ C  S +C  H+R+   +S+TY    ++  + YG G
Sbjct:   65 PFTNYLDSYYFGEISIGTPPQNFLILFDTGSSNLWVPSTYCQ-SQACSNHNRFNPSRSSTYQSSEQTYTLAYGFG 138          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  163 LNAARITRKERYMGGAGVSGVHHRLGDSDEDIL--PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            +   R T +E+ +    +    +RL  +D  I   PL+N++D  Y G I IG+PPQ F V+FDTGS+NLWVP   C  S +CY H  +  + S+++ E+G    I YGSG
Sbjct:   24 MKTLRETLREKNLLNNFLEEQAYRLSKNDSKITIHPLRNYLDTAYVGNITIGTPPQEFRVVFDTGSANLWVPCITC-TSPACYTHKTFNPQNSSSFREVGSPITIFYGSG 132          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS  C  S++C  H+++    S+T+    +   I YG+G
Sbjct:   64 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITYGTG 137          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL+N++D  Y G I IG+PPQ FSV+FDTGSS+LWVPS  C  S +C  H  +    S+T+ + GKS ++ YGSG
Sbjct:   67 PLRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCK-SKACVTHRSFNPSHSSTFHDRGKSIKLEYGSG 140          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  229 HRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            +R GD      P+ +++DA YFGEI IG+P QNF V+FDTGSSNLWVPS  C  S +C  H+R+   KS+T+    ++  + YGSG
Sbjct:   54 YRFGDFSVTYEPM-DYLDAAYFGEISIGTPSQNFLVLFDTGSSNLWVPSVYCQ-SEACTTHNRFNPSKSSTFYTYDQTFSLEYGSG 137          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            L+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS  C  S +C  H+++    S+T+    +S  I YG+G
Sbjct:   67 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSAACSVHNQFNPEDSSTFQATSESLSITYGTG 139          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  229 HRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            H+  DS     P++N++D  Y G I +G+PPQ F VIFDTGS++LWVPS  C  S +C  H+ +   +S+T+   G+  ++ YG+G
Sbjct:   54 HKHADSGVAFEPMRNYLDIAYMGIISVGTPPQEFQVIFDTGSADLWVPSIYC-SSPACSNHNTFNPLRSSTFVASGQPIKLIYGTG 138          
The following BLAST results are available for this feature:
BLAST of DN617342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PEPA_CALJA1.054e-1653.33Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPE_CHICK1.377e-1650.67Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1[more]
PEPC_RAT1.377e-1656.34Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPB_CANFA1.377e-1650.67Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PAG2_BOVIN1.377e-1640.00Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
PEPA_PIG1.798e-1650.67Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PAG2_PIG1.798e-1652.00Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]
PEPC_RABIT3.068e-1648.84Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
PEPA3_RABIT3.068e-1651.35Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PAG_HORSE9.868e-1541.86Pregnancy-associated glycoprotein OS=Equus caballu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617342 ID=DN617342; Name=DN617342; organism=Citrus sinensis; type=EST; length=487bp
TTCAAACTCAGCTTCAGCAGAAAACCAAAGAACATCATGGAGCAGAAACT
TCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTC
CTGCTTCCTCTAATGGCTTACGGAGAATTGGCTTGAAGAAGCGGCGTCTA
GATCTTCATAGTCTAAATGCTGCAAGAATAACAAGAAAAGAGCGATATAT
GGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGTTTGGGTGATTCAGATG
AAGATATTTTGCCTTTGAAGAACTTTATGGATGCTCAATACTTTGGAGAG
ATTGGTATTGGCTCTCCCCCACAAAATTTCAGTGTCATATTTGATACCGG
CAGTTCCAATCTCTGGGTTCCATCTTCAAAGTGCTATTTCTCTATTTCCT
GCTATTTCCATTCGAGGTACAAGTCCAGAAAATCCAATACATATACCGAA
ATGGGAAAATCCTGTGAAATAAACTATGGATCTGGAT
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