DN617342

Overview
NameDN617342
Unique NameDN617342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:87..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  241 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE 450
            DS   ++ L N  D  YFGEIGIG+PPQ F+VIFDTGSS LWVPSSK         HS Y+S  S+TY E
Sbjct:    1 DSGSTVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKA--------HSMYESSDSSTYKE 62          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  241 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE 450
            DS   ++ L N  D  YFGEIGIG+PPQ F+VIFDTGSS LWVPSSK         HS Y+S  S+TY E
Sbjct:    1 DSGSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKA--------HSMYESSGSSTYKE 62          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  262 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            PL+N  D  Y G I IG+PPQ F V+FDT SS+LWVPS  C  S +C  H R++  +S+T+    K+  I YGSG
Sbjct:   62 PLRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFC-TSPACSTHVRFRHLQSSTFRLTNKTFRITYGSG 135          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  241 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            D D    PL+N++D  Y G I IG+PPQ F V+ DTGS++LWVPS  C  S +C  H+ +    S+T+   G+   I YGSG
Sbjct:   58 DPDVSFEPLRNYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYC-SSPACGKHNTFNPLLSSTFLVSGRPINIVYGSG 138          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  241 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTY 444
            DS   ++ L N  D  Y+GEIGIG+PPQ F+VIFDTGSS LWVPSSK         HS Y+S  S+TY
Sbjct:    2 DSGSAVVALTNDRDTSYYGEIGIGTPPQKFTVIFDTGSSVLWVPSSKA--------HSMYESSGSSTY 61          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  253 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            D + L +  +  Y+GE  IG   Q F+ IFDTGS+NLWVPS++C  +I C   + Y S KS TY + G   E+NY SG
Sbjct:  127 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSG 203          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  253 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            D + L +  +  Y+GE  IG   Q F+ IFDTGS+NLWVPS++C  +I C   + Y S KS TY + G   E+NY SG
Sbjct:  127 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSG 203          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  265 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            + +F D +Y G I IG+P Q F V+ DTGSSNLW+P   C    +C   S++ S  S+T+ + GKS  I YGSG
Sbjct:   63 VNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC--KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSG 134          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  244 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSIS--CYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            S+  I PL+N MD  Y G I IG+PPQ F V+FDTGSS+L VPS  C       C    ++K  +S+T+     +  I +GSG
Sbjct:   56 SNLTIHPLRNIMDMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINCLSPTKRPCSKQDKFKHHQSSTFRFTNDTFRIYFGSG 138          
BLAST of DN617342 vs. ExPASy Swiss-Prot
Match: PAG1_PIG (Pregnancy-associated glycoprotein 1 OS=Sus scrofa GN=PAG1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  259 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEMGKSCEINYGSG 486
            L L N++D  Y G I IG+PPQ FSVIFDT SS+LWVPS++C+ S +C  H  +    S+T+    ++ ++   SG
Sbjct:   66 LRLWNYLDMVYVGNITIGTPPQLFSVIFDTASSDLWVPSNQCH-SRACVTHRSFNPTLSSTFQSSNRTVKLAPHSG 140          
The following BLAST results are available for this feature:
BLAST of DN617342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CARDG_CYNCA1.683e-1457.14Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDH_CYNCA3.750e-1457.14Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PAG1_BOVIN6.396e-1449.33Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
PEPAF_RABIT1.091e-1345.12Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
CARDF_CYNCA2.431e-1355.88Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PLM1_PLAFA1.575e-1246.15Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF71.575e-1246.15Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
ASP6_CAEEL2.058e-1245.95Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]
PAG1_SHEEP2.275e-1143.37Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
PAG1_PIG2.275e-1144.74Pregnancy-associated glycoprotein 1 OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617342 ID=DN617342; Name=DN617342; organism=Citrus sinensis; type=EST; length=487bp
TTCAAACTCAGCTTCAGCAGAAAACCAAAGAACATCATGGAGCAGAAACT
TCTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTC
CTGCTTCCTCTAATGGCTTACGGAGAATTGGCTTGAAGAAGCGGCGTCTA
GATCTTCATAGTCTAAATGCTGCAAGAATAACAAGAAAAGAGCGATATAT
GGGGGGAGCAGGTGTTAGTGGCGTGCACCATCGTTTGGGTGATTCAGATG
AAGATATTTTGCCTTTGAAGAACTTTATGGATGCTCAATACTTTGGAGAG
ATTGGTATTGGCTCTCCCCCACAAAATTTCAGTGTCATATTTGATACCGG
CAGTTCCAATCTCTGGGTTCCATCTTCAAAGTGCTATTTCTCTATTTCCT
GCTATTTCCATTCGAGGTACAAGTCCAGAAAATCCAATACATATACCGAA
ATGGGAAAATCCTGTGAAATAAACTATGGATCTGGAT
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